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transcriptomics

May 29, 2020

Metatranscriptomic Study of COVID-19 Patients Shows More Disrupted Airway Microbiome

The researchers also found that COVID-19 patients had a special trigger host immune response in certain pathways, such as interferon gamma signaling.

May 26, 2020

PNAS Papers on Retinal Development, Adoptive T Cell Transfer, Blood Cell Differentiation

In PNAS this week: forward genetics-base analysis of retinal development, interactions of T cell receptors with neoantigens in colorectal cancer, and more.

May 13, 2020

Transcriptional Signatures May Identify Whether Malaria Vaccines Are Effective

Researchers uncovered gene expression signatures that can predict whether someone may be protected by a malaria vaccine even before it is given.

May 11, 2020

10x Genomics Q1 Revenues Increase 34 Percent

The Pleasanton, California-based firm reported $71.9 million in revenues but missed the consensus Wall Street estimates for quarterly revenues as well as loss per share.

May 11, 2020

PLOS Papers on Drug-Resistant TB Detection, Dengue Mosquito Vector Diversity in Manila, More

In PLOS this week: sequencing-based way to uncover drug resistance in tuberculosis bacteria, genetic population structure of mosquito vectors, and more.

May 07, 2020

Nature Papers Describe Cell Clustering Approach, Synthetic Genomics, More

In Nature this week: method to cluster cells based on single-cell RNA sequencing reads, synthetic genomics platform reconstructs SARS-CoV-2, and more.

Apr 30, 2020

Nature Studies Examines Cells Involved in Complex Brain Traits, Analysis of Modern Maize

In Nature this week: combining genome-wide association and transcriptome study data homes in on cells involved in brain disorders, and more.

Apr 30, 2020

Washington University, BostonGene Expand Kidney Cancer Research Collaboration

WUSTL will evaluate BostonGene's software, which integrates data from NGS with immunofluorescence imaging to profile tumors and their microenvironments.

Apr 29, 2020

Lexogen Nabs Austrian Funding for RNA-Seq Coronavirus Test

Lexogen did not disclose the funding amount, but said it was one of €16 million ($17.4 million) in awards from the Austria Research Promotion Agency.

Apr 28, 2020

PNAS Papers on Pancreatic Cells, Honey Bee Bacteriophages, Drug-Resistant Prostate Cancer

In PNAS this week: single-cell RNA sequencing study of pancreatic duct cells, sequencing of viruses affecting honey bees, and more.

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The Scan

Trump Announces Departure From WHO

President Donald Trump announced the US would be leaving the World Health Organization, NBC News reports.

Also, Vacuums Are Just Scary

A study of Great Danes homes in on a genomic region linked to fearfulness.

Limited Early Spread

CDC head says a new analysis indicates earlier testing wouldn't have caught viral spread, NPR reports.

PLOS Papers on Indonesian Archipelago Populations, Hookworm Secretome, Carotid Plaque GWAS

In PLOS this week: gene expression and epigenetics of Indonesian populations, hookworm parasite secretome, and more.

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In transcriptomics

  1. Metatranscriptomic Study of COVID-19 Patients Shows More Disrupted Airway Microbiome

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