phylogenetic analysis | GenomeWeb

phylogenetic analysis

Using sequence data for more than 1,800 Salmonella enterica serovar Typhi isolates, researchers identified 68 SNPs to trace the bug to its geographical source. 

By sequencing autopsy samples linked to an anthrax outbreak in 1979, investigators got a glimpse at Bacillus anthracis spores from a USSR production facility.

A Georgia Tech team used random mutagenesis on a red fluorescent protein gene to develop a phylogeny to test algorithms that reconstruct ancestral sequences.

Westvleteren Trappist ales

Researchers sequenced the genomes of 157 industrial strains of yeast, and found differences correlating to how the strains are used.

This is a black snub-nosed monkey.

Researchers performed whole-genome sequencing and built phylogenetic trees to elucidate the biology of this mountain tree-dwelling species.

This Week in PLOS

In PLOS this week: variants that affect COPD biomarkers, high genetic diversity of Cryptococcus gattii in Brazil, and more.

A Texas-led team examined the phylogenetic trees of gut bacteria from humans, chimpanzees, bonobos, and gorillas, and found they largely reflect their hosts.

A Wellcome Trust Sanger Institute-led team analyzed the Y chromosome sequences of some 1,200 men from 26 populations, and constructed a phylogenetic tree.

Genetic analysis of Zika virus sequences has uncovered nucleotide and protein sequence changes, including one that may have a role in virulence.

Researchers reported on the spotted gar genome, representing a ray-finned fish lineage that diverged prior to the whole-genome duplication affecting the teleost lineage.


In Nature this week: genetic history of HIV in the US, and more.

There are a few projects aimed at addressing the lack of diversity in genomic research, Technology Review reports.

A national assessment shows that US students lag in the sciences, but suggests that achievement gaps are narrowing.

Harvard's George Church discusses HGP-write with the Journal of the American Medical Association.