BESST — Efficient scaffolding of large fragmented assemblies.
Sahlin K, Vezzi F, Nystedt B, Lundeberg J, Arvestad L.
BMC Bioinformatics. 2014 Aug 15;15(1):281.
HiChIP: a high-throughput pipeline for integrative analysis of ChIP-seq data.
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BMC Bioinformatics. 2014 Aug 15;15(1):280.
In silico analysis identifies novel restriction enzyme combinations that expand reduced representation bisulfite sequencing CpG coverage.
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BMC Res Notes. 2014 Aug 15;7(1):534.
HapMuC: somatic mutation calling using heterozygous germline variants near candidate mutations.
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Bioinformatics. 2014 Aug 14. [Epub ahead of print]
READemption — a tool for the computational analysis of deep-sequencing-based transcriptome data.
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Bioinformatics. 2014 Aug 13. [Epub ahead of print]
MindTheGap: integrated detection and assembly of short and long insertions.
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Bioinformatics. 2014 Aug 14. [Epub ahead of print]
FASTQSim: platform-independent data characterization and in silico read generation for NGS datasets.
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BMC Res Notes. 2014 Aug 15;7(1):533.
A scalable and accurate targeted gene assembly tool (SAT-assembler) for next-generation sequencing data.
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PLOS Comput Biol. 2014 Aug 14;10(8):e1003737.
A comparative study of techniques for differential expression analysis on RNA-seq data.
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PLOS One. 2014 Aug 13;9(8):e103207.
A high-density genetic map for soybean based on specific length amplified fragment sequencing.
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PLOS One. 2014 Aug 12;9(8):e104871.
Theoretical study of the transpore velocity control of single-stranded DNA.
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Int J Mol Sci. 2014 Aug 11;15(8):13817-32.
Exome sequencing of three cases of familial exceptional longevity.
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Aging Cell. 2014 Aug 12. [Epub ahead of print]
The South Asian genome.
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PLOS One. 2014 Aug 12;9(8):e102645.
Rodents of the Caribbean: origin and diversification of hutias unravelled by next-generation museomics.
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Biol Lett. 2014 Jul;10(7).
Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance.
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Nat Genet. 2014 Jun;46(6):558-66.
Random whole metagenomic sequencing for forensic discrimination of soils.
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PLOS One. 2014 Aug 11;9(8):e104996.
Solving the problem of comparing whole bacterial genomes across different sequencing platforms.
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PLOS One. 2014 Aug 11;9(8):e104984.
Validation of multiple single nucleotide variation calls by additional exome analysis with a semiconductor sequencer to supplement data of whole-genome sequencing of a human population.
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BMC Genomics. 2014 Aug 10;15(1):673.
Next-generation sequencing of multiple individuals per barcoded library by deconvolution of sequenced amplicons using endonuclease fragment analysis.
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Biotechniques. 2014 Aug 1;57(2):91-4.
Modeling genome coverage in single cell sequencing.
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Bioinformatics. 2014 Aug 8. [Epub ahead of print]
Fast construction of FM-index for long sequence reads.
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Bioinformatics. 2014 Aug 8. [Epub ahead of print]
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PLOS One. 2014 Aug 8;9(8):e104566.
High-accuracy de novo assembly and SNP detection of chloroplast genomes using a SMRT circular consensus sequencing strategy.
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New Phytol. 2014 Aug 8. [Epub ahead of print]
Single molecule investigation of Ag(+) interactions with single cytosine-, methylcytosine- and hydroxymethylcytosine-cytosine mismatches in a nanopore.
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Sci Rep. 2014 Aug 8;4:5883.
SUGAR: graphical user interface-based data refiner for high-throughput DNA sequencing.
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BMC Genomics. 2014 Aug 8;15(1):664.
Identification of copy number variants from exome sequence data.
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BMC Genomics. 2014 Aug 7;15(1):661.