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In Print: Last Week's Sequencing-Related Papers of Note: Jan 14, 2014


Assessment of whole genome amplification for sequence capture and massively parallel sequencing.
Hasmats J, Gréen H, Orear C, Validire P, et al.
PLOS One. 2014 Jan 7;9(1):e84785.

Single-cell RNA-seq reveals dynamic, random monoallelic gene expression in mammalian cells.
Deng Q, Ramsköld D, Reinius B, Sandberg R.
Science. 2014 Jan 10;343(6167):193-6.

Improved reduced representation bisulfite sequencing for epigenomic profiling of clinical samples.
Lee YK, Jin S, Duan S, Lim YC, et al.
Biol Proced Online. 2014 Jan 9;16(1):1.

Comparative analysis of nucleotide translocation through protein nanopores using steered molecular dynamics and an adaptive biasing force.
Martin HS, Jha S, Coveney PV.
J Comput Chem. 2014 Jan 9. [Epub ahead of print]

Genetics of single-cell protein abundance variation in large yeast populations.
Albert FW, Treusch S, Shockley AH, Bloom JS, Kruglyak L.
Nature. 2014 Jan 8. [Epub ahead of print]

Base preferences in non-templated nucleotide incorporation by MMLV-derived reverse transcriptases.
Zajac P, Islam S, Hochgerner H, Lönnerberg P, Linnarsson S.
PLOS One. 2013 Dec 31;8(12):e85270.

Low-bandwidth and non-compute intensive remote identification of microbes from raw sequencing reads.
Gautier L, Lund O.
PLOS One. 2013 Dec 31;8(12):e83784.

Preparing unbiased T-cell receptor and antibody cDNA libraries for the deep next generation sequencing profiling.
Mamedov IZ, Britanova OV, Zvyagin IV, Turchaninova MA, et al.
Front Immunol. 2013 Dec 23;4:456.

Bias from removing read duplication in ultra-deep sequencing experiments.
Zhou W, Chen T, Zhao H, Eterovic AK, et al.
Bioinformatics. 2014 Jan 2. [Epub ahead of print]

Diminishing return for increased mappability with longer sequencing reads: implications of the k-mer distributions in the human genome.
Li W, Freudenberg J, Miramontes P.
BMC Bioinformatics. 2014 Jan 3;15(1):2.

An unbiased resource of novel SNP markers provides a new chronology for the human Y chromosome and reveals a deep phylogenetic structure in Africa.
Scozzari R, Massaia A, Trombetta B, Bellusci G, et al.
Genome Res. 2014 Jan 6. [Epub ahead of print]

Advancing the functional utility of PAR-CLIP by quantifying background binding to mRNAs and lncRNAs.
Friedersdorf MB, Keene JD.
Genome Biol. 2014 Jan 7;15(1):R2.

Chromatin connectivity maps reveal dynamic promoter-enhancer long-range associations.
Zhang Y, Wong CH, Birnbaum RY, Li G, et al.
Nature. 2013 Dec 12;504(7479):306-10.