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In Print: Last Week's Sequencing-Related Papers of Note: Dec 17, 2013


A reference methylome database and analysis pipeline to facilitate integrative and comparative epigenomics.
Song Q, Decato B, Hong EE, Zhou M, et al.
PLoS One. 2013 Dec 6;8(12):e81148.

SIOMICS: a novel approach for systematic identification of motifs in ChIP-seq data.
Ding J, Hu H, Li X.
Nucleic Acids Res. 2013 Dec 9. [Epub ahead of print]

QPLOT: a quality assessment tool for next generation sequencing data.
Li B, Zhan X, Wing MK, Anderson P, et al.
Biomed Res Int. 2013;2013:865181.

RNA-seq differential expression studies: more sequence, or more replication?
Liu Y, Zhou J, White KP.
Bioinformatics. 2013 Dec 6. [Epub ahead of print]

Transcription-generated torsional stress destabilizes nucleosomes.
Teves SS, Henikoff S.
Nat Struct Mol Biol. 2013 Dec 8. [Epub ahead of print]

Refined DNase-seq protocol and data analysis reveals intrinsic bias in transcription factor footprint identification.
He HH, Meyer CA, Hu SS, Chen MW, et al.
Nat Methods. 2013 Dec 8. [Epub ahead of print]

Non-uniform phenotyping of D12S391 resolved by second generation sequencing.
Dalsgaard S, Rockenbauer E, Buchard A, Mogensen HS, et al.
Forensic Sci Int Genet. 2014 Jan;8(1):195-9.

Characterization of mutations and sequence variants in the D21S11 locus by next generation sequencing.
Rockenbauer E, Hansen S, Mikkelsen M, Børsting C, Morling N.
Forensic Sci Int Genet. 2014 Jan;8(1):68-72.

Sample size calculation based on exact test for assessing differential expression analysis in RNA-seq data.
Li CI, Su PF, Shyr Y.
BMC Bioinformatics. 2013 Dec 6;14(1):357.