DistMap: a toolkit for distributed short read mapping on a Hadoop cluster.
Pandey RV, Schlötterer C.
PLOS One. 2013 Aug 23;8(8):e72614.
Comparative oncogenomic analysis of copy number alterations in human and zebrafish tumors enables cancer driver discovery.
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PLOS Genet. 2013 Aug;9(8):e1003734.
The enhancer landscape during early neocortical development reveals patterns of dense regulation and co-option.
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PLOS Genet. 2013 Aug;9(8):e1003728.
PAVIS: a tool for Peak Annotation and Visualization.
Huang W, Loganantharaj R, Schroeder B, Fargo D, Li L.
Bioinformatics. 2013 Sep 4. [Epub ahead of print]
Oxidative bisulfite sequencing of 5-methylcytosine and 5-hydroxymethylcytosine.
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Nat Protoc. 2013 Oct;8(10):1841-51.
Archival bone marrow trephines are suitable for high-throughput mutation analysis using next generation sequencing technology.
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Haematologica. 2013 Sep;98(9):e115-6.
Fast mitochondrial DNA isolation from mammalian cells for next-generation sequencing.
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Biotechniques. 2013 Sep;55(3):133-6.
A cost-effective method for high-throughput construction of illumina sequencing libraries.
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Cold Spring Harb Protoc. 2013 Sep 1;2013(9).
Combining Hi-C data with phylogenetic correlation to predict the target genes of distal regulatory elements in human genome.
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Nucleic Acids Res. 2013 Sep 3. [Epub ahead of print]
Discovery of a divergent HPIV4 from respiratory secretions using second and third generation metagenomic sequencing.
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Sci Rep. 2013 Sep 3;3:2468.
A statistical variant calling approach from pedigree information and local haplotyping with phase informative reads.
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Bioinformatics. 2013 Sep 3. [Epub ahead of print]
Functional DNA quantification guides accurate next-generation sequencing mutation detection in formalin-fixed, paraffin-embedded tumor biopsies.
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Genome Med. 2013 Aug 30;5(8):77.
Efficacy of a 3rd generation high-throughput sequencing platform for analyses of 16S rRNA genes from environmental samples.
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J Microbiol Methods. 2013 Aug 30. [Epub ahead of print]
Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ).
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Plant J. 2013 Sep 2. [Epub ahead of print]