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In Print: Last Week's Sequencing-Related Papers of Note: Aug 20, 2013


Electron beam induced local crystallization of HfO2 nanopores for biosensing applications.
Shim J, Rivera JA, Bashir R.
Nanoscale. 2013 Aug 15. [Epub ahead of print]

Joint haplotype phasing and genotype calling of multiple individuals using haplotype informative reads.
Zhang K, Zhi D.
Bioinformatics 2013 Aug 13. [Epub ahead of print]

DRAW+SneakPeek: Analysis workflow and quality metric management for DNA-seq experiments.
Lin CF, Valladares O, Childress DM, Klevak E, et al.
Bioinformatics. 2013 Aug 13. [Epub ahead of print]

Barnacle: detecting and characterizing tandem duplications and fusions in transcriptome assemblies.
Swa L, Robertson G, Mungall KL, Butterfield YS, et al.
BMC Genomics. 2013 Aug 14;14(1):550.

Isothermal amplification method for next-generation sequencing.
Ma Z, Lee RW, Li B, Kenney P, et al.
Proc Natl Acad Sci U S A. 2013 Aug 12. [Epub ahead of print]

MHC genotyping of non-model organisms using next-generation sequencing: a new methodology to deal with artefacts and allelic dropout.
Sommer S, Courtiol A, Mazzoni CJ.
BMC Genomics. 2013 Aug 9;14(1):542.

The Scan

Study Reveals New Details About Genetics of Major Cause of Female Infertility

Researchers in Nature Medicine conducted a whole-exome sequencing study of mote than a thousand patients with premature ovarian insufficiency.

Circulating Tumor DNA Shows Potential as Biomarker in Rare Childhood Cancer

A study in the Journal of Clinical Oncology has found that circulating tumor DNA levels in rhabdomyosarcoma may serve as a biomarker for prognosis.

Study Recommends Cancer Screening for Dogs Beginning Age Seven, Depending on Breed

PetDx researchers report in PLOS One that annual cancer screening for dogs should begin by age seven.

White-Tailed Deer Harbor SARS-CoV-2 Variants No Longer Infecting Humans, Study Finds

A new study in PNAS has found that white-tailed deer could act as a reservoir of SARS-CoV-2 variants no longer found among humans.