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Nat Protoc. 2013 Jun 13;8(7):1337-53.
Characterization of tetracycline resistant bacterial community in saline activated sludge using batch stress incubation with high-throughput sequencing analysis.
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Water Res. 2013 May 3;47(13):4207-4216.
A Modified RNA-Seq Approach for Whole Genome Sequencing of RNA Viruses from Faecal and Blood Samples.
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PLoS One. 2013 Jun 10;8(6):e66129.
diffReps: Detecting Differential Chromatin Modification Sites from ChIP-seq Data with Biological Replicates.
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PLoS One. 2013 Jun 6;8(6):e62692.
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Comprehensive genotyping of the USA national maize inbred seed bank.
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Genome Biol. 2013 Jun 11;14(6):R55.
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BMC Genomics. 2013 Jun 10;14(1):389.
ChIPXpress: using publicly available gene expression data to improve ChIP-seq and ChIP-chip target gene ranking.
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BMC Bioinformatics. 2013 Jun 10;14(1):188.
QualComp: a new lossy compressor for quality scores based on rate distortion theory.
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BMC Bioinformatics. 2013 Jun 8;14(1):187.
Benchmarking short sequence mapping tools.
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BMC Bioinformatics. 2013 Jun 7;14(1):184.
Chemical Modification-Assisted Bisulfite Sequencing (CAB-Seq) for 5-Carboxylcytosine Detection in DNA.
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Discovering motifs that induce sequencing errors.
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BMC Bioinformatics. 2013;14 Suppl 5:S1.
Assembling contigs in draft genomes using reversals and block-interchanges.
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BMC Bioinformatics. 2013;14 Suppl 5:S9.
A random-permutations-based approach to fast read alignment.
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BMC Bioinformatics. 2013;14 Suppl 5:S8.
Bellerophon: a hybrid method for detecting interchromo-somal rearrangements at base pair resolution using next-generation sequencing data.
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metaBEETL: high-throughput analysis of heterogeneous microbial populations from shotgun DNA sequences.
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BMC Bioinformatics. 2013;14 Suppl 5:S17.
Gene set enrichment analysis of RNA-Seq data: integrating differential expression and splicing.
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BMC Bioinformatics. 2013;14 Suppl 5:S16.
A novel min-cost flow method for estimating transcript expression with RNA-Seq.
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BMC Bioinformatics. 2013;14 Suppl 5:S15.
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BMC Bioinformatics. 2013;14 Suppl 5:S14.
Evaluating genome architecture of a complex region via generalized bipartite matching.
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BMC Bioinformatics. 2013;14 Suppl 5:S13.
The new sequencer on the block: comparison of Life Technology's Proton sequencer to an Illumina HiSeq for whole-exome sequencing.
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Bioinformatics. 2013 Jun 10. [Epub ahead of print]
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Epigenomics. 2013 Jun;5(3):255-69.
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Bioinformatics. 2013 Jun 8. [Epub ahead of print]
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Bioinformatics. 2013 Jun 11. [Epub ahead of print]
PurBayes: estimating tumor cellularity and subclonality in next-generation sequencing data.
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Bioinformatics. 2013 Jun 14. [Epub ahead of print]
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