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In Print: Last Week's Clinical Sequencing Papers of Note: Jan 11, 2012


Characterisation and discovery of novel miRNAs and moRNAs in JAK2V617F mutated SET2 cells.
Bortoluzzi S, Bisognin A, Biasolo M, Guglielmelli P, et al.
Blood. 2012 Jan 5. [Epub ahead of print]

14-3-3 fusion oncogenes in high-grade endometrial stromal sarcoma.
Lee CH, Ou WB, Mariño-Enriquez A, Zhu M, et al.
Proc Natl Acad Sci U S A. 2012 Jan 5. [Epub ahead of print]

Selective analysis of cell-free DNA in maternal blood for evaluation of fetal trisomy.
Sparks AB, Wang ET, Struble CA, Barrett W, et al.
Prenat Diagn. 2012 Jan 6:1-7. [Epub ahead of print]

Computational approaches to disease gene prediction: rationale, classification and successes.
Piro RM, Di Cunto F.
FEBS J. 2012 Jan 5. [Epub ahead of print]

Exome capture sequencing identifies a novel mutation in BBS4.
Wang H, Chen X, Dudinsky L, Patenia C, et al.
Mol Vis. 2011;17:3529-40.

Differential oestrogen receptor binding is associated with clinical outcome in breast cancer.
Ross-Innes CS, Stark R, Teschendorff AE, Holmes KA, et al.
Nature. 2012 Jan 4. [Epub ahead of print]

Identification of sequence variants in genetic disease-causing genes using targeted next-generation sequencing.
Wei X, Ju X, Yi X, Zhu Q, et al.
PLoS One. 2011;6(12):e29500.

Global analysis of DNA methylation by methyl-capture sequencing reveals epigenetic control of Cisplatin resistance in ovarian cancer cell.
Yu W, Jin C, Lou X, Han X, et al.
PLoS One. 2011;6(12):e29450.

No evidence of murine leukemia virus-related viruses in live attenuated human vaccines.
Switzer WM, Zheng H, Simmons G, Zhou Y, et al.
PLoS One. 2011;6(12):e29223.

A viral discovery methodology for clinical biopsy samples utilizing massively parallel next generation sequencing.
Daly GM, Bexfield N, Heaney J, Stubbs S, et al.
PLoS One. 2011;6(12):e28879.

Deep-sequencing analysis of the mouse transcriptome response to infection with Brucella melitensis strains of differing virulence.
Wang F, Hu S, Liu W, Qiao Z, et al.
PLoS One. 2011;6(12):e28485.

Variations in the exome of the LNCaP prostate cancer cell line.
Spans L, Atak ZK, Van Nieuwerburgh F, Deforce D, et al.
Prostate. 2011 Dec 27. [Epub ahead of print]

The Scan

Study Reveals New Details About Genetics of Major Cause of Female Infertility

Researchers in Nature Medicine conducted a whole-exome sequencing study of mote than a thousand patients with premature ovarian insufficiency.

Circulating Tumor DNA Shows Potential as Biomarker in Rare Childhood Cancer

A study in the Journal of Clinical Oncology has found that circulating tumor DNA levels in rhabdomyosarcoma may serve as a biomarker for prognosis.

Study Recommends Cancer Screening for Dogs Beginning Age Seven, Depending on Breed

PetDx researchers report in PLOS One that annual cancer screening for dogs should begin by age seven.

White-Tailed Deer Harbor SARS-CoV-2 Variants No Longer Infecting Humans, Study Finds

A new study in PNAS has found that white-tailed deer could act as a reservoir of SARS-CoV-2 variants no longer found among humans.