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In Print: Last Week's Clinical Sequencing Papers of Note: Mar 14, 2012

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Automating HIV drug resistance genotyping with RECall, a freely accessible sequence analysis tool.
Woods CK, Brumme CJ, Liu TF, Chui CK, et al.
J Clin Microbiol. 2012 Mar 7. [Epub ahead of print]


Deep resequencing unveils genetic architecture of ADIPOQ and identifies a novel low-frequency variant strongly associated with adiponectin variation.
Warren LL, Li L, Nelson MR, Ehm MG, et al.
Diabetes. 2012 Mar 8. [Epub ahead of print]


Next-generation DNA re-sequencing identifies common variants of TYR and HLA-A that modulate the risk of generalized vitiligo via antigen presentation.
Jin Y, Ferrara T, Gowan K, Holcomb C, et al.
J Invest Dermatol. 2012 Mar 8. [Epub ahead of print]


De novo sequencing of circulating miRNAs identifies novel markers predicting clinical outcome of locally advanced breast cancer.
Wu X, Somlo G, Yu Y, Palomares MR, et al.
J Transl Med. 2012 Mar 8;10(1):42.


A modified method for whole exome resequencing from minimal amounts of starting DNA.
Kozarewa I, Rosa-Rosa JM, Wardell CP, Walker BA, et al.
PLoS One. 2012;7(3):e32617.


Intratumor heterogeneity and branched evolution revealed by multiregion sequencing.
Gerlinger M, Rowan AJ, Horswell S, Larkin J, et al.
N Engl J Med. 2012 Mar 8;366(10):883-92.


Versatile pathway-centric approach based on high-throughput sequencing to anticancer drug discovery.
Li H, Zhou H, Wang D, Qiu J, et al.
Proc Natl Acad Sci U S A. 2012 Mar 6. [Epub ahead of print]


Autosomal dominant myofibrillar myopathy with arrhythmogenic right ventricular cardiomyopathy 7 is caused by a DES mutation.
Hedberg C, Melberg A, Kuhl A, Jenne D, Oldfors A.
Eur J Hum Genet. 2012 Mar 7. [Epub ahead of print]


Melanoma whole-exome sequencing identifies (V600E)B-RAF amplification-mediated acquired B-RAF inhibitor resistance.
Shi H, Moriceau G, Kong X, Lee MK, et al.
Nat Commun. 2012 Mar 6;3:724.


Characterization of within-host Plasmodium falciparum diversity using next-generation sequence data.
Auburn S, Campino S, Miotto O, Djimde AA, et al.
PLoS One. 2012;7(2):e32891.


In-depth characterization of viral isolates from plasma and cells compared with plasma circulating quasispecies in early HIV-1 infection.
Dalmau J, Codoñer FM, Erkizia I, Pino M, et al.
PLoS One. 2012;7(2):e32714.


Evolutionary dynamics of Staphylococcus aureus during progression from carriage to disease.
Young BC, Golubchik T, Batty EM, Fung R, et al.
Proc Natl Acad Sci U S A. 2012 Mar 5. [Epub ahead of print]

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