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Papers of Note: Nov 16, 2010

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A de novo paradigm for mental retardation.
Vissers LE, de Ligt J, Gilissen C, Janssen I, et al.
Nat Genet. 2010 Nov 14. [Epub ahead of print]


Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection.
Lam HM, Xu X, Liu X, Chen W, et al.
Nat Genet. 2010 Nov 14. [Epub ahead of print]


Identifying single bases in a DNA oligomer with electron tunnelling.
Huang S, He J, Chang S, Zhang P, et al.
Nat Nanotechnol. 2010 Nov 14. [Epub ahead of print]


Statistical confidence measures for genome maps: application to the validation of genome assemblies.
Servin B, de Givry S, Faraut T.
Bioinformatics. 2010 Nov 13. [Epub ahead of print]


The Uniqueome: A mappability resource for short-tag sequencing.
Koehler R, Issac H, Cloonan N, Grimmond SM.
Bioinformatics. 2010 Nov 12. [Epub ahead of print]


The honey bee epigenomes: differential methylation of brain DNA in queens and workers.
Lyko F, Foret S, Kucharski R, Wolf S, et al.
PLoS Biol. 2010 Nov 2;8(11):e1000506.


RNA polymerase II binding patterns reveal genomic regions involved in microRNA gene regulation.
Wang G, Wang Y, Shen C, Huang YW, et al.
PLoS One. 2010 Nov 2;5(11):e13798.


Cooperative translocation dynamics of biopolymer chains through nanopores in a membrane: Slow dynamics limit.
Wang HJ, Gu F, Hong XZ, Ba XW.
Eur Phys J E Soft Matter. 2010 Oct 31. [Epub ahead of print]


Sequence capture and next-generation resequencing of multiple tagged nucleic acid samples for mutation screening of urea cycle disorders.
Amstutz U, Andrey-Zürcher G, Suciu D, Jaggi R, et al.
Clin Chem. 2010 Nov 10. [Epub ahead of print]


Mutation analysis of 18 nephronophthisis associated ciliopathy disease genes using a DNA pooling and next generation sequencing strategy.
Otto EA, Ramaswami G, Janssen S, Chaki M, et al.
J Med Genet. 2010 Nov 10. [Epub ahead of print]


PriSM: A primer selection and matching tool for amplification and sequencing of viral genomes.
Yu Q, Ryan EM, Allen TM, Birren BW, et al.
Bioinformatics. 2010 Nov 9. [Epub ahead of print]


A first genome assembly of the barley fungal pathogen Pyrenophora teres f. teres.
Ellwood SR, Liu Z, Syme RA, Lai Z, et al.
Genome Biol. 2010 Nov 10;11(11):R109.


DNMT3A mutations in acute myeloid leukemia.
Ley TJ, Ding L, Walter MJ, McLellan MD, et al.
N Engl J Med. 2010 Nov 10. [Epub ahead of print]


Targeted resequencing of candidate genes using selector probes.
Johansson H, Isaksson M, Falk Sörqvist E, Roos F, et al.
Nucleic Acids Res. 2010 Nov 8. [Epub ahead of print]


Accurate quantification of transcriptome from RNA-seq data by effective length normalization.
Lee S, Seo CH, Lim B, Yang JO, et al.
Nucleic Acids Res. 2010 Nov 8. [Epub ahead of print]


Rapid innovation in ChIP-seq peak-calling algorithms is outdistancing benchmarking efforts.
Szalkowski AM, Schmid CD.
Abstract Brief Bioinform. 2010 Nov 8. [Epub ahead of print]


Spatially differing bacterial communities in water columns of the northern Baltic Sea.
Koskinen K, Hultman J, Paulin L, Auvinen P, Kankaanpää H.
FEMS Microbiol Ecol. 2010 Oct 18. [Epub ahead of print]


Assessment of genetic variation for the LINE-1 retrotransposon from next generation sequence data.
Rouchka E, Montoya-Durango DE, Stribinskis V, Ramos K, Kalbfleisch T.
BMC Bioinformatics. 2010 Oct 28;11 Suppl 9:S12.

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