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Last Week's Sequencing-Related Papers of Note: Sep 27, 2011


Transcriptome analysis and comparison reveal divergence between two invasive whitefly cryptic species.
Wang XW, Luan JB, Li JM, Su YL, et al.
BMC Genomics. 2011 Sep 22;12(1):458.

Unveiling in situ interactions between marine protists and bacteria through single cell sequencing.
Martinez-Garcia M, Brazel D, Poulton NJ, Swan BK, et al.
ISME J. 2011 Sep 22. [Epub ahead of print]

SEM-induced shrinking of solid-state nanopores for single molecule detection.
Prabhu AS, Freedman KJ, Robertson JW, Nikolov Z, et al.
Nanotechnology. 2011 Sep 22;22(42):425302.

Characterization of transcriptome dynamics during watermelon fruit development: sequencing, assembly, annotation and gene expression profiles.
Guo S, Liu J, Zheng Y, Huang M, et al.
BMC Genomics. 2011 Sep 21;12(1):454.

CDinFusion — submission-ready, on-line integration of sequence and contextual data.
Hankeln W, Wendel NJ, Gerken J, Waldmann J, et al.
PLoS One. 2011;6(9):e24797. Epub 2011 Sep 13.

ChIP-Seq: technical considerations for obtaining high-quality data.
Kidder BL, Hu G, Zhao K.
Nat Immunol. 2011 Sep 20;12(10):918-22.

Nanopore-based single molecule mass spectrometry on a lipid membrane microarray.
Baaken G, Ankri N, Schuler AK, Rühe J, Behrends JC.
ACS Nano. 2011 Sep 20. [Epub ahead of print]

Droplet-based pyrosequencing using digital microfluidics.
Boles DJ, Benton JL, Siew GJ, Levy MH, et al.
Anal Chem. 2011 Sep 20. [Epub ahead of print]

Application of high-resolution, massively parallel pyrosequencing for estimation of haplotypes and gene expression levels of swine leukocyte antigen (SLA) class I genes.
Kita YF, Ando A, Tanaka K, Suzuki S, et al.
Immunogenetics. 2011 Sep 20. [Epub ahead of print]

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Novel molecular and computational methods improve the accuracy of insertion site analysis in sleeping beauty-induced tumors.
Brett BT, Berquam-Vrieze KE, Nannapaneni K, Huang J, et al.
PLoS One. 2011;6(9):e24668. Epub 2011 Sep 13.

Ralstonia syzygii, the blood disease bacterium and some Asian R. solanacearum strains form a single genomic species despite divergent lifestyles.
Remenant B, de Cambiaire JC, Cellier G, Jacobs JM, et al.
PLoS One. 2011;6(9):e24356. Epub 2011 Sep 8.

Genome-wide prediction and analysis of human chromatin boundary elements.
Wang J, Lunyak VV, Jordan IK.
Nucleic Acids Res. 2011 Sep 19. [Epub ahead of print]

Characterization of the sesame (Sesamum indicum L.) global transcriptome using Illumina paired-end sequencing and development of EST-SSR markers.
Wei W, Qi X, Wang L, Zhang Y, et al.
BMC Genomics. 2011 Sep 19;12(1):451. [Epub ahead of print]

Opera: Reconstructing optimal genomic scaffolds with high-throughput paired-end sequences.
Gao S, Sung WK, Nagarajan N.
J Comput Biol. 2011 Sep 19. [Epub ahead of print]

Gate manipulation of DNA capture into nanopore.
He Y, Tsutsui M, Fan C, Taniguchi M, Kawai T.
ACS Nano. 2011 Sep 19. [Epub ahead of print]

The Scan

Support for Moderna Booster

An FDA advisory committee supports authorizing a booster for Moderna's SARS-CoV-2 vaccine, CNN reports.

Testing at UK Lab Suspended

SARS-CoV-2 testing at a UK lab has been suspended following a number of false negative results.

J&J CSO to Step Down

The Wall Street Journal reports that Paul Stoffels will be stepping down as chief scientific officer at Johnson & Johnson by the end of the year.

Science Papers Present Proteo-Genomic Map of Human Health, Brain Tumor Target, Tool to Infer CNVs

In Science this week: gene-protein-disease map, epigenomic and transcriptomic approach highlights potential therapeutic target for gliomas, and more