Lacking alignments? The next generation sequencing mapper segemehl revisited.
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Bioinformatics. 2014 Mar 13. [Epub ahead of print]
An improved canine genome and a comprehensive catalogue of coding genes and non-coding transcripts.
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PLOS One. 2014 Mar 13;9(3):e91172.
Analysis options for high-throughput sequencing in miRNA expression profiling.
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BMC Res Notes. 2014 Mar 13;7(1):144.
Vicinal: a method for the determination of ncRNA ends using chimeric reads from RNA-seq experiments.
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Nucleic Acids Res. 2014 Mar 12. [Epub ahead of print]
Orione, a web-based framework for NGS analysis in microbiology.
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Bioinformatics. 2014 Mar 10. [Epub ahead of print]
Turtle: Identifying frequent k-mers with cache-efficient algorithms.
Roy RS, Bhattacharya D, Schliep A.
Bioinformatics. 2014 Mar 10. [Epub ahead of print]
pRESTO: a toolkit for processing high-throughput sequencing raw reads of lymphocyte receptor repertoires.
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Bioinformatics. 2014 Mar 10. [Epub ahead of print]
Genomewide, quantitative analysis of DNA methylation from bisulfite sequencing data.
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Bioinformatics. 2014 Mar 10. [Epub ahead of print]
A gradient boosting approach for filtering de novo mutations in parent-offspring trios.
Liu Y, Li B, Tan R, Zhu X, Wang Y.
Bioinformatics. 2014 Mar 10. [Epub ahead of print]
Sequence capture using PCR-generated probes (SCPP): a cost-effective method of targeted high-throughput sequencing for non-model organisms.
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Mol Ecol Resour. 2014 Mar 11. [Epub ahead of print]
Target enrichment using parallel nanoliter quantitative PCR amplification.
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BMC Genomics. 2014 Mar 10;15(1):184.
Shotgun microbial profiling of fossil remains.
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Mol Ecol. 2014 Feb 12. [Epub ahead of print]
A robust approach for blind detection of balanced chromosomal rearrangements with whole-genome low-coverage sequencing.
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Hum Mutat. 2014 Mar 7. [Epub ahead of print]
PolyaPeak: detecting transcription factor binding sites from ChIP-seq using peak shape information.
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PLOS One. 2014 Mar 7;9(3):e89694.
Palindromic sequence artifacts generated during next generation sequencing library preparation from historic and ancient DNA.
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PLOS One. 2014 Mar 7;9(3):e89676.
Qualifying high-throughput immune repertoire sequencing.
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Cell Immunol. 2014 Feb 23;288(1-2):31-38.
SearchSmallRNA: a graphical interface tool for the assemblage of viral genomes using small RNA libraries data.
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Virol J. 2014 Mar 7;11(1):45.