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Last Week's Sequencing-Related Papers of Note: Feb 11, 2014


SASI-seq: sample assurance spike-ins, and highly differentiating 384 barcoding for Illumina sequencing.
Quail MA, Smith M, Jackson D, Leonard S, et al.
BMC Genomics. 2014 Feb 7;15(1):110.

A rat RNA-seq transcriptomic BodyMap across 11 organs and 4 developmental stages.
Yu Y, Fuscoe JC, Zhao C, Guo C, et al.
Nat Commun. 2014 Feb 10;5:3230.

Pore-size reduction protocol for SiN membrane nanopore using the thermal reflow in nanoimprinting for nanobio-based sensing.
Lee DS, Song HW, Choi CG, Jung MY.
J Biomed Opt. 2014 May 1;19(5):51211.

The HTS barcode checker pipeline, a tool for automated detection of illegally traded species from high-throughput sequencing data.
Lammers Y, Peelen T, Vos RA, Gravendeel B.
BMC Bioinformatics. 2014 Feb 6;15(1):44.

A simple method for gene phasing using mate pair sequencing.
Cradic KW, Murphy SJ, Drucker TM, Sikkink RA, et al.
BMC Med Genet. 2014 Feb 6;15(1):19.

Improving read mapping using additional prefix grams.
Kim J, Li C, Xie X.
BMC Bioinformatics. 2014 Feb 5;15(1):42.

Re-sequencing expands our understanding of the phenotypic impact of variants at GWAS loci.
Service SK, Teslovich TM, Fuchsberger C, Ramensky V, et al.
PLOS Genet. 2014 Jan 30;10(1):e1004147.

Relationship estimation from whole-genome sequence data.
Li H, Glusman G, Hu H, Shankaracharya, et al.
PLOS Genet. 2014 Jan 30;10(1):e1004144.

Empirical assessment of RAD sequencing for interspecific phylogeny.
Cruaud A, Gautier M, Galan M, Foucaud J, et al.
Mol Biol Evol. 2014 Feb 3. [Epub ahead of print]

Regulating the transport of DNA through biofriendly nanochannels in a thin solid membrane.
Wang D, Harrer S, Luan B, Stolovitzky G, et al.
Sci Rep. 2014 Feb 5;4:3985.

Comparison of three next-generation sequencing platforms for metagenomic sequencing and identification of pathogens in blood.
Frey KG, Herrera-Galeano JE, Redden CL, Luu TV, et al.
BMC Genomics. 2014 Feb 4;15(1):96.

Comprehensive analysis to improve the validation rate for single nucleotide variants detected by next-generation sequencing.
Park MH, Rhee H, Park JH, Woo HM, et al.
PLOS One. 2014 Jan 29;9(1):e86664.

Whole-genome sequence of a flatfish provides insights into ZW sex chromosome evolution and adaptation to a benthic lifestyle.
Chen S, Zhang G, Shao C, Huang Q, et al.
Nat Genet. 2014 Feb 2. [Epub ahead of print]

Voom: precision weights unlock linear model analysis tools for RNA-seq read counts.
Law CW, Chen Y, Shi W, Smyth GK.
Genome Biol. 2014 Feb 3;15(2):R29.

Origin of current blockades in nanopore translocation experiments.
Kesselheim S, Müller W, Holm C.
Phys Rev Lett. 2014 Jan 10;112(1):018101.

Escape of DNA from a weakly biased thin nanopore: experimental evidence for a universal diffusive behavior.
Hoogerheide DP, Albertorio F, Golovchenko JA.
Phys Rev Lett. 2013 Dec 13;111(24):248301.

The Scan

WHO Seeks Booster Pause

According to CNN, the World Health Organization is calling for a moratorium on administering SARS-CoV-2 vaccine boosters until more of the world has received initial doses.

For Those Long Legs

With its genome sequence and subsequent RNAi analyses, researchers have examined the genes that give long legs to daddy longlegs, New Scientist says.

September Plans

The New York Times reports that the US Food and Drug Administration is aiming for early September for full approval of the Pfizer-BioNTech SARS-CoV-2 vaccine.

Nucleic Acids Research Papers on Targeting DNA Damage Response, TSMiner, VarSAn

In Nucleic Acids Research this week: genetic changes affecting DNA damage response inhibitor response, "time-series miner" approach, and more.