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Last Week's Sequencing-Related Papers of Note: Jan 28, 2014


Spatial blockage of ionic current for electrophoretic translocation of DNA through a graphene nanopore.
Lv W, Liu S, Li X, Wu R.
Electrophoresis. 2014 Jan 23. [Epub ahead of print]

ngsTools: methods for population genetics analyses from next-generation sequencing data.
Fumagalli M, Vieira FG, Linderoth T, Nielsen R.
Bioinformatics. 2014 Jan 23. [Epub ahead of print]

Transmissable dog cancer genome reveals the origin and history of an ancient cell lineage.
Murchison EP, Wedge DC, Alexandrov LB, Fu B, et al.
Science. 2014 Jan 24;343(6169):437-40.

Feasibility of whole RNA sequencing from single-cell mRNA amplification.
Xu Y, Hu H, Zheng J, Li B.
Genet Res Int. 2013;2013:724124.

STORMSeq: An open-source, user-friendly pipeline for processing personal genomics data in the cloud.
Karczewski KJ, Fernald GH, Martin AR1, Snyder M, et al.
PLoS One. 2014 Jan 15;9(1):e84860.

Comparison of RNA-seq and microarray in transcriptome profiling of activated T cells.
Zhao S, Fung-Leung WP, Bittner A, Ngo K, Liu X.
PLoS One. 2014 Jan 16;9(1):e78644.

Genome sequencing highlights the dynamic early history of dogs.
Freedman AH, Gronau I, Schweizer RM, Ortega-Del Vecchyo D, et al.
PLoS Genet. 2014 Jan;10(1):e1004016.

Which specimens from a museum collection will yield DNA barcodes? A time series study of spiders in alcohol.
Miller JA, Beentjes KK, van Helsdingen P, Ijland S.
Zookeys. 2013 Dec 30;(365):245-61.

Super-resolution optical DNA mapping via DNA methyltransferase-directed click chemistry.
Vranken C, Deen J, Dirix L, Stakenborg T, et al.
Nucleic Acids Res. 2014 Jan 21. [Epub ahead of print]

BLESS: Bloom-filter-based error correction solution for high-throughput sequencing reads.
Heo Y, Wu XL, Chen D, Ma J, Hwu WM.
Bioinformatics. 2014 Jan 21. [Epub ahead of print]

Microbial phylogenetic profiling with the Pacific Biosciences sequencing platform.
Fichot EB, Norman RS.
Microbiome. 2013 Mar 4;1(1):10.

Molecular indexing enables quantitative targeted RNA sequencing and reveals poor efficiencies in standard library preparations.
Fu GK, Xu W, Wilhelmy J, Mindrinos MN, et al.
Proc Natl Acad Sci U S A. 2014 Jan 21. [Epub ahead of print]

AG-NGS: A powerful and user-friendly computing application for the semi-automated preparation of next-generation sequencing libraries using open liquid handling platforms.
Callejas S, Alvarez R, Benguria A, Dopazo A.
Biotechniques. 2014 Jan;56(1):28-35.

High precision fabrication and positioning of nanoelectrodes in a nanopore.
Ivanov AP, Freedman KJ, Kim M, Albrecht T, Edel JB.
ACS Nano. 2014 Jan 21. [Epub ahead of print]

SeqBench: Integrated solution for the management and analysis of exome sequencing data.
Dander A, Pabinger S, Sperk M, Fischer M, et al.
BMC Res Notes. 2014 Jan 20;7(1):43.

Exploring genome characteristics and sequence quality without a reference.
Simpson JT.
Bioinformatics. 2014 Jan 17. [Epub ahead of print]