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Papers of Note: Dec 10, 2009

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RNAi-Related Papers Published November 2009

A Family of microRNAs Encoded by Myosin Genes Governs Myosin Expression and Muscle Performance

Developmental Cell, Nov. 2009; 17: 5, 662-673
Olson et al.


Identification of microRNA Activity by Targets' Reverse Expression

Bioinformatics, Nov. 6, 2009; epub ahead of print
Croce et al.


Rice microRNA Effector Complexes and Targets

Plant Cell, Nov. 10, 2009; epub ahead of print
Qi et al.


Concordant Regulation of Translation and mRNA Abundance for Hundreds of Targets of a Human microRNA

PLoS Biology, Nov. 10, 2009; epub ahead of print
Brown et al.


GenomeRNAi: a Database for Cell-Based RNAi Phenotypes

Nucleic Acids Research, Nov. 12, 2009; epub ahead of print
Boutros et al.


Hierarchical Rules for Argonaute Loading in Drosophila

Molecular Cell, Nov. 13, 2009; 36: 3, 445-456
Hannon et al.


Distinct Mechanisms for microRNA Strand Selection by Drosophila Argonautes

Molecular Cell, Nov. 13, 2009; 36: 3, 431-444
Lai et al.


Transgenic microRNA Inhibition with Spatiotemporal Specificity in Intact Organisms

Nature Methods, Nov. 15, 2009; epub ahead of print
Fulga et al.


Interaction of RNA Polymerase II and the Small RNA Machinery Affects Heterochromatic Silencing in Drosophila

Epigenetics & Chromatin, Nov. 16, 2009; 2: 1, 15
Kavi & Birchler


Analysis of Acyclic Nucleoside Modifications in siRNAs Finds Sensitivity at Position 1 that is Restored by 5'-Terminal Phosphorylation Both In Vitro and In Vivo

Nucleic Acids Research, Nov. 16, 2009; epub ahead of print
Flanagan et al.


Sorting of Drosophila Small Silencing RNAs Partitions microRNA* Strands into the RNA Interference Pathway

RNA, Nov. 16, 2009; epub ahead of print
Zamore et al.


mimiRNA: a microRNA-Expression Profiler and Classification Resource Designed to Identify Functional Correlations Between microRNAs and Their Targets

Bioinformatics, Nov. 17, 2009; epub ahead of print
Rasko et al.


MIRAGAA — A Methodology for Finding Coordinated Effects of microRNA-Expression Changes and Genome Aberrations in Cancer

Bioinformatics, Nov. 23, 2009; epub ahead of print
Haviv et al.


A Personalized microRNA Microarray-Normalization Method Using a Logistic Regression Model

Bioinformatics, Nov.23, 2009; epub ahead of print
Xi et al.


Distinct Passenger Strand and mRNA Cleavage Activities of Human Argonaute Proteins

Nature Structural & Molecular Biology, Nov. 29, 2009; epub ahead of print
Novina et al.


siDirect 2.0: Updated Software for Designing Functional siRNA with Reduced Seed-Dependent Off-Target Effect

BMC Bioinformatics, Nov. 30, 2009; epub ahead of print
Ui-Tei et al.


The Endogenous siRNA Pathway is Involved in Heterochromatin Formation in Drosophila

Proceedings of the National Academy of Sciences, Nov. 30, 2009; epub ahead of print
Antoniewski et al.


Consensus miRNA Expression Profiles Derived from Interplatform Normalization of Microarray Data

RNA, Nov. 30, 2009; epub ahead of print
Pillai et al.


Mature and Functional Viral miRNAs Transcribed from Novel RNA Polymerase III Promoters

RNA, Nov. 30, 2009; epub ahead of print
van Dyk et al.

The Scan

Just Breathing

A new analysis suggests that most Mycobacterium tuberculosis is spread by aerosols from breathing, rather than by coughing, the New York Times reports.

Just Like This One

NPR reports that the World Health Organization has hired a South African biotech company to recreate mRNA vaccine for SARS-CoV-2 that is similar to the one developed by Moderna.

Slow Start

The Wall Street Journal reports that Biogen's Alzheimer's disease treatment had revenues for July through September that totaled $300,000.

Genome Research Papers on Cancer Chromatin, Splicing in the Thymus, Circular RNAs in Cancer

In Genome Research this week: analysis of bivalent chromatin sites, RBFOX splicing factors' role in thymic epithelial cells, and more.