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GenomOncology Pathology Workbench

GenomOncology has released a new version of GenomOncology (GO) Pathology Workbench, which the software company said has been updated to process Illumina's TruSight Oncology (TSO) 500 assay and other larger panels. GO Pathology Workbench now can process samples in parallel, cutting sample annotation time by 80 percent. The new release also adds management of higher sample throughput as well as intepretation of copy numbers and structural variants in next-generation sequencing. It draws from datasets not included in previous releases of Pathology Workbench, including gnomAD, MutationTaster, PolyPhen, SIFT, cancerhotspots.org, and the Cancer Gene Census.

The Scan

Machine Learning Helps ID Molecular Mechanisms of Pancreatic Islet Beta Cell Subtypes in Type 2 Diabetes

The approach helps overcome limitations of previous studies that had investigated the molecular mechanisms of pancreatic islet beta cells, the authors write in their Nature Genetics paper.

Culture-Based Methods, Shotgun Sequencing Reveal Transmission of Bifidobacterium Strains From Mothers to Infants

In a Nature Communications study, culture-based approaches along with shotgun sequencing give a better picture of the microbial strains transmitted from mothers to infants.

Microbial Communities Can Help Trees Adapt to Changing Climates

Tree seedlings that were inoculated with microbes from dry, warm, or cold sites could better survive drought, heat, and cold stress, according to a study in Science.

A Combination of Genetics and Environment Causes Cleft Lip

In a study published in Nature Communications, researchers investigate what combination of genetic and environmental factors come into play to cause cleft lip/palate.