Systems Biology Informatics Manager for the Digital Salmon - Ref. 16/00453 | GenomeWeb

Systems Biology Informatics Manager for the Digital Salmon - Ref. 16/00453

Organization
Norwegian University of Life Sciences (NMBU)
Job Location
1430 Ås
Norway
Salary
NOK 483400-560400 per year
Benefits

NMBU offers:

  • The national node for digital production biology within Digital Life Norway, with great opportunities for cross-disciplinary theoretical-experimental, applied research.
  • Beautiful surroundings just outside Oslo.
  • A sociable and inclusive work environment.
  • Good welfare schemes.
Job Description

The Department of Animal and Aquacultural Sciences seeks a bioinformatician or systems biologist with skills or interest in ontological annotation, semantic interoperability or knowledge management for a researcher position (3 years with possibility of extension). The successful candidate will be central in establishing a knowledge base for the systems biology of farmed salmon, and will work within the Centre for Integrative Genetics (CIGENE).

 

Research project

The project “Towards the Digital Salmon: From a reactive to a pre-emptive research strategy in aquaculture (DigiSal)” is part of Digital Life Norway, the first call dedicated to systems biology by the Research Council of Norway. Effective management of data and model resources is key in this endeavour, and DigiSal will initiate The Digital Salmon: a knowledge base of salmon genetics and physiology, interfacing closely with complementary databases, repositories, and research infrastructures such as ELIXIR. This knowledge base is a key deliverable of the Digisal project and the long-term ambition is that it will enable aquaculture industry to quickly address emerging challenges, quickly reanalysing existing data and identifying knowledge gaps to rapidly acquire required new data.

 

Main tasks

The successful applicant will help design the architecture of the Digital Salmon knowledge base, in close interaction with the researchers that will contribute to and benefit from the knowledge base, and with partners that provide technical solutions. Users include bioinformaticians and wet-lab researchers who generate omics data and microscopy images, and systems biologists who develop physiological models e.g. of salmon metabolism.

Requirements

Academic qualifications

Required

  • PhD in relevant field of informatics, bioinformatics or systems biology.

 Preferred

  • Experience with semantic web standard technologies and semantic annotation.
  • Familiarity with knowledge management in cross-disciplinary biology research projects.

Desired

  • Familiarity with relevant European research infrastructures and data or model repositories.
  • Basic understanding of mathematical modelling in biology.
  • Experience in web development.
  • Experience in software development. 

 

Desired personal qualities

The systems biology informatics manager will be central in integrating data and models to facilitate transdisciplinary research for salmon production. Thus, the following personal characteristics are important:

  • Excellent ability to synthesize information: Collect user requirements, prioritize them, and propose practical solutions.
  • Good English skills
  • Ability to communicate well with biological researchers to identify users’ needs and promote effective use of the knowledge management system.
  • Willingness to spend shorter stays at collaborating institutions
  • Ability for independent work displaying initiative, creative and careful thought
How to Apply

Email enquiries welcome: Jon Olav Vik, jonovik@gmail.com

To apply, see the full announcement with link to application form.

Please note that it's okay to upload a CV as a pdf attachment, saving the hassle of entering the information piecemeal into the electronic application system.

About Our Organization

The Norwegian University of Life Sciences (NMBU) has 1700 employees and 5100 students, and is currently located on two campuses – Ås, about 30 km south of Oslo, and Adamstuen in Oslo. NMBU does basic and applied research addressing global challenges regarding energy and climate change, the environment, health, food safety, technology and renewable solutions, use and conservation of land and natural resources, and development of the bio-economy.

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