Senior Bioinformaticist

Minimum Qualifications:

• Bachelor's degree in Computer Science, Information Systems, Bioinformatics or Life Sciences, including fields, i.e., Biology, Molecular Biology, Genetics.
• Two to five years' experience analyzing next-gen sequencing data (Illumina whole genomes or exomes): BCL to annotated variants
• Two to five years' experience developing and maintaining pipelines for 24x7 automated bioinformatics analyses
• Two to five years' experience integrating pipeline with the LIMS
• Two to five years' experience working with and understanding of open source NGS tools like bwa, samtools, vcftools, picard, GATK, Freebayes, ANNOVAR, VEP, etc.
• Two to five years' experience incorporating dbGaP, 1000 genomes, ExAC, Clinvar, OMIM, etc
• Two to five years' experience with unix/linux operating system
• Two to five years' experience software development using any of Ruby, Python, Perl, Bash
• Two to five years' experience working with SVN, git
• Two to five years' experience working with HPC scheduling systems such as Moab, TORQUE, LSF, OpenGrid Engine, etc.

Preferred Qualifications:

• Demonstrated experience working in CNV and SV calling
• Demonstrated experience in phenotype-genotype integration frameworks
• Demonstrated experience working with cloud-based development or analysis
• Demonstrated experience working in a CAP/CLIA environment
• Demonstrated experience performing benchmarking of bioinformatics tools
• Demonstrated experience developing and working with Docker and AWS images
• Demonstrated experience in database development using MySQL, or any NoSQL flavors
• Demonstrated experience in setting up and computing on a hadoop cluster
• Demonstrated experience programming using C or Java