Data Enrichment and Integration Coordinator

Organization
EMBL-EBI
Job Location
EMBL-EBI Wellcome Genome Campus
Hinxton
Cambridge
Cambridgeshire
CB10 1SD
United Kingdom
Salary
Competitive
Benefits

EMBL is an inclusive, equal opportunity employer offering attractive conditions and benefits appropriate to an international research organisation. The remuneration package comprises a competitive salary, a comprehensive pension scheme and health insurance, educational and other family related benefits where applicable, as well as financial support for relocation and installation.

We have an informal culture, international working environment and excellent professional development opportunities but one of the really amazing things about us is the concentration of technical and scientific expertise – something you probably won’t find anywhere else.

If you’ve ever visited the campus you’ll have experienced first-hand our friendly, collegial and supportive atmosphere, set in the beautiful Cambridgeshire countryside. Our staff also enjoy excellent sports facilities including a gym, a free shuttle bus, an on-site nursery, cafés and restaurant and a library.

Job Description

The Protein Data Bank in Europe team (PDBe; pdbe.org) is part of the Worldwide Protein Data Bank organisation (wwPDB; wwpdb.org), which maintains the global archive of structural data on biomacromolecules. The PDBe team also maintains a number of databases that support deposition and advanced search services for structural biologists and the wider scientific community. The team consists of an international and inter-disciplinary mix of professional scientists and software engineers. The PDBe team is part of the Molecular and Cellular Structure cluster within EMBL-EBI, part of the European Molecular Biology Laboratory (EMBL). EMBL-EBI is a world-leading bioinformatics centre providing biological data to the scientific community with expertise in data storage, analysis and representation. EMBL-EBI provides freely available data from life science experiments, performs basic research in computational biology and offers an extensive user training programme, supporting researchers in academic and industry.

We are looking to recruit a Data Enrichment and Integration Coordinator to help the PDBe team stay abreast of and meet the changing needs of the broad scientific community by developing pipelines for enrichment, integration, and quality improvement of biomacromolecular structure data and tools for its delivery.

The Coordinator will be expected:

  • to manage the Data Enrichment and Integration sub-team that is responsible for data annotation, integration and enrichment projects;
  • to maintain a close collaboration with the wwPDB partners;
  • to represent the PDBe team in the global wwPDB deposition and annotation system (OneDep) leadership team;
  • to manage the PDBe contributions to the development of the wwPDB common data-deposition, annotation and validation pipeline;
  • to coordinate the PDB data-annotation project with the Biocuration manager in the sub-team;
  • to coordinate the EMDB data-annotation project with the Biocuration manager in consultation with the leader of the team that manages EMDB;
  • to work with the PDBe Team Leader to deliver new functionality by developing and managing data enrichment and integration projects that enhance and/or exploit biomacromolecular information;
  • to interact with other EMBL-EBI teams to develop collaborative data integration and enrichment projects;
  • to help the PDBe Training and Outreach lead organise workshops and training courses and develop training strategy in consultation with the PDBe Team Leader;
  • to represent PDBe at relevant meetings and conferences to keep abreast of, and contribute to, new developments in the field;
  • to work with the PDBe Team Leader and other team members to publish project outcomes in scientific articles in the peer-reviewed literature;
  • to help the PDBe Team Leader in future planning and in developing collaborative projects;
  • to contribute to PDBe grant applications, reporting, personnel recruitments, staff evaluations, and associated tasks.

As a Coordinator, the successful candidate will report directly to the PDBe Team Leader. This is an opportunity for the right person to make an impact on how the scientific community uses biomacromolecular structure data and enhanced information available through PDBe tools and services.

Requirements

Applicants should have a PhD and a minimum 3 years of post-PhD training in academia or industry with experience in managing a small team of professional experts. Extensive knowledge in the area of structural biology or structural chemistry as well as a broad knowledge in molecular biology or biochemistry is essential.. An in-depth knowledge of protein structure (including structure determination and/or analysis and validation) is essential.

The work involves extensive interactions with colleagues in the PDBe team as well as with collaborators, international partners, depositors and users. Therefore, excellent written and oral communication skills, fluency in English, and attention to detail are required. Furthermore, the position requires regular travel to meetings in the UK, Europe and beyond.

How to Apply

To apply please submit a covering letter and CV, with two referees, through our online system at http://ig14.i-grasp.com//fe/tpl_embl01.asp?newms=jj&id=56236&aid=15470

About Our Organization

At EMBL-EBI, we help scientists realise the potential of ‘big data’ in biology by enabling them to exploit complex information to make discoveries that benefit mankind. Working for EMBL-EBI gives you an opportunity to apply your skills and energy for the greater good. As part of the European Molecular Biology Laboratory (EMBL), we are a non-profit, intergovernmental organisation funded by 23 member states and two associate member states and proud to be an equal-opportunity employer. We are located on the Wellcome Genome Campus near Cambridge in the UK, and our 600 staff are engineers, technicians, scientists and other professionals from all over the world.

An analysis appearing in PeerJ finds that social media mentions of a paper may lead to increased citations.

NIH's Michael Lauer looks at the number of grants, their amount, and funding success rates at the agency for last year.

At Nature, Johns Hopkins' Gundula Bosch describes her graduate program that aims to get doctoral students thinking about the big picture.

Patricia Fara writes about childcare funding, and women in science and science history at NPR.