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Recent Proteomics Papers of Note (A-J)*

Recent Proteomics Papers of Note (A-J)*
Journal Title Authors
Acta Crystallographica. Section D, Biological Crystallography.
2005 Oct;61(Pt 10):1364-72. Epub 2005 Sep 28.
Three-dimensional structure determination of proteins related to human health in their functional context at The Israel Structural Proteomics Center (ISPC)This paper was presented at ICCBM10. Albeck S, Burstein Y, Dym O, Jacobovitch Y, Levi N, Meged R, Michael Y, Peleg Y, Prilusky J, Schreiber G, Silman I, Unger T, Sussman JL.
American Journal of Obstetrics and Gynecology. 2005 Oct;193(4):1302-6. Detection of intra-amniotic infection in a rabbit model by proteomics-based amniotic fluid analysis. Klein LL, Freitag BC, Gibbs RS, Reddy AP, Nagalla SR, Gravett MG.
American Journal of Pharmacogenomics.
Proteomic cancer classification with mass spectrometry data. Rajapakse JC, Duan KB, Kiang Yeo W.
American Journal of Respiratory and Critical Care Medicine.
2005 Sep 22;
[Epub ahead of print]
Proteomic Patterns of Preinvasive Bronchial Lesions. Rahman SM, Shyr Y, Yildiz PB, Gonzalez AL, Li H, Zhang X, Chaurand P, Yanagisawa K, Slovis BS, Miller RF, Ninan M, Miller YE, Franklin WA, Caprioli RM, Carbone DP, Massion PP.
Analytical Chemistry.
2005 Oct 15;77(20):6692-701.
Ultrahigh-Throughput Proteomics Using Fast RPLC Separations with ESI-MS/MS. Shen Y, Smith RD, Unger KK, Kumar D, Lubda D.
Analytical Chemistry.
2005 Sep 15;77(18):6078-84.
Selective sampling of phosphopeptides for detection by MALDI mass spectrometry. Zhang H, Zhang C, Lajoie GA, Yeung KK.
Biology of the Neonate.
2005 Oct 5;89(2):126-132
[Epub ahead of print]
Protein Detection in Dried Blood by Surface-Enhanced Laser Desorption/Ionization-Time of Flight Mass Spectrometry (SELDI-TOF MS). Dammann CE, Meyer M, Dammann O, von Neuhoff N.
Biotechnology Progress.
2005 Sep-Oct;21(5):1401-11.
Proteomic Profiling of Escherichia coli Proteins under High Cell Density Fed-Batch Cultivation with Overexpression of Phosphogluconolactonase. Wang Y, Wu SL, Hancock WS, Trala R, Kessler M, Taylor AH, Patel PS, Aon JC.
2005 Oct;129(4):1187-97.
Pancreatic cancer proteome: the proteins that underlie invasion, metastasis, and immunologic escape. Chen R, Yi EC, Donohoe S, Pan S, Eng J, Cooke K, Crispin DA, Lane Z, Goodlett DR, Bronner MP, Aebersold R, Brentnall TA.
IEEE Transactions on Imaging Processing.
2005 Sep;14(9):1351-9.
Object type recognition for automated analysis of protein subcellular location. Zhao T, Velliste M, Boland MV, Murphy RF.
Journal of Chemical Information and Modeling.
2005 Sep-Oct;45(5):1205-13.
Novel characterization of proteomics maps by sequential neighborhoods of protein spots. Randic M, Novic M, Vracko M.
Journal of Chromatography B. Analytical Technologies in the Biomedical and Life Sciences.
2005 Nov 5;826(1-2):122-8. Epub 2005 Sep 12.
Protein identification assisted by the prediction of retention time in liquid chromatography/tandem mass spectrometry. Wang Y, Zhang J, Gu X, Zhang XM.
Journal of Chromatography B. Analytical Technologies in the Biomedical and Life Sciences.
2005 Oct 14;
[Epub ahead of print]
Redox proteomics identification of oxidatively modified proteins in Alzheimer's disease brain and in vivo and in vitro models of AD centered around Abeta(1-42). Sultana R, Perluigi M, Butterfield DA.
Journal of Proteome Research.
2005 Oct 10;4(5):1826-1831.
STEM: A Software Tool for Large-Scale Proteomic Data Analyses. Shinkawa T, Taoka M, Yamauchi Y, Ichimura T, Kaji H, Takahashi N, Isobe T.
Journal of Proteome Research. 2005 Sep-Oct;4(5):1561-8. Investigation of the mouse serum proteome. Hood BL, Zhou M, Chan KC, Lucas DA, Kim GJ, Issaq HJ, Veenstra TD, Conrads TP.
Journal of Proteome Research.
2005 Sep-Oct;4(5):1569-74.
Ultra fast trypsin digestion of proteins by high intensity focused ultrasound. Lopez-Ferrer D, Capelo JL, Vazquez J.
Journal of Proteome Research.
2005 Sep-Oct;4(5):1646-56.
Biosensor-based micro-affinity purification for the proteomic analysis of protein complexes. Catimel B, Rothacker J, Catimel J, Faux M, Ross J, Connolly L, Clippingdale A, Burgess AW, Nice E.
Journal of Proteome Research.
2005 Sep-Oct;4(5):1742-51.
Characterization of proteins in human pancreatic cancer serum using differential gel electrophoresis and tandem mass spectrometry. Yu KH, Rustgi AK, Blair IA.
Journal of Proteome Research.
2005 Sep-Oct;4(5):1814-25.
Comparative Plasma Proteome Analysis of Lymphoma-Bearing SJL Mice. Bhat VB, Choi MH, Wishnok JS, Tannenbaum SR.
Journal of Theoretical Biology.
2005 Sep 27;
[Epub ahead of print]
Fuzzy KNN for predicting membrane protein types from pseudo-amino acid composition. Shen HB, Yang J, Chou KC.
*K-Z will be published in next week's ProteoMonitor


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