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Recent Proteomics Papers of Note: May 27, 2005

Recent Proteomics Papers of Note
Analytical Chemistry.
2005 May 15;77(10):3198-207.
Evaluating Preparative Isoelectric Focusing of Complex Peptide Mixtures for Tandem Mass Spectrometry-Based Proteomics: A Case Study in Profiling Chromatin-Enriched Subcellular Fractions in Saccharomyces cerevisiae. Xie H, Bandhakavi S, Griffin TJ.

Annals of the New York Academy of Science.
2005 Apr;1040:504-7.

Differential proteomics for studying Drosophila immunity. Vierstraete E, Verleyen P, DE Loof A, Schoofs L.
Biological Sciences
in Space.

2004 Nov;18(3):156-7.
Gravity-regulated proteins of Arabidopsis and cucumber seedlings detected by 2-D electrophoresis. Kamada M, Takaoki M, Ishioka N.
Brain Research.
2005 May 24;1044(2):206-15. Epub 2005 Apr 15.
Proteomic identification of proteins oxidized by Abeta(1-42) in synaptosomes: Implications for Alzheimer's disease. Boyd-Kimball D, Castegna A, Sultana R, Poon HF, Petroze R, Lynn BC, Klein JB, Butterfield DA.
2005 May 13;
[Epub ahead of print]
Quantitative validation of different protein precipitation methods in proteome analysis of blood platelets. Zellner M, Winkler W, Hayden H, Diestinger M, Eliasen M, Gesslbauer B, Miller I, Chang M, Kungl A, Roth E, Oehler R.
2005 May 3;
[Epub ahead of print]
Use of a fluorescent phosphoprotein dye to characterize oxidative stress-induced signaling pathway components in macrophage and epithelial cultures exposed to diesel exhaust particle chemicals. Wang M, Xiao GG, Li N, Xie Y, Loo JA, Nel AE.
2005 May 11; [Epub ahead of print]
Identification of the Hydrophobic Glycoproteins of Caenorhabditis Elegans. Fan X, She YM, Bagshaw RD, Callahan JW, Schachter H, Mahuran DJ.
Infection and Immunity.
2005 Jun;73(6):3646-58.
Comparative Secretome Analyses of Three Bacillus anthracis Strains with Variant Plasmid Contents. Lamonica JM, Wagner M, Eschenbrenner M, Williams LE, Miller TL, Patra G, Delvecchio VG.
Journal of
Chromatography A.

2005 Apr 8;1070(1-2):193-200.
Dual-purpose sample trap for on-line strong cation-exchange chromatography/reversed-phase liquid chromatography/tandem mass spectrometry for shotgun proteomics. Application to the human Jurkat T-cell proteome. Kang D, Nam H, Kim YS, Moon MH.
Journal of Clinical Oncology.
2005 May 20;23(15):3614-21.
Mapping molecular networks using proteomics: a vision for patient-tailored combination therapy. Petricoin EF 3rd, Bichsel VE, Calvert VS, Espina V, Winters M, Young L, Belluco C, Trock BJ, Lippman M, Fishman DA, Sgroi DC, Munson PJ, Esserman LJ, Liotta LA.
2004 Apr 27;20(9):3704-9.
Methods for generating protein molecular ions in ToF-SIMS. McArthur SL, Vendettuoli MC, Ratner BD, Castner DG.
Molecular and Cellular Proteomics.
2005 Apr 25;
[Epub ahead of print]
Subcellular proteomics of neuromelanin granules isolated from the human brain. Tribl F, Gerlach M, Marcus K, Asan E, Tatschner T, Arzberger T, Meyer HE, Bringmann G, Riederer P.
Nucleic Acids Research.
2005 Apr 28;33(8):2355-63. Print 2005.
Large-scale analysis of human alternative protein isoforms: pattern classification and correlation with subcellular localization signals. Nakao M, Barrero RA, Mukai Y, Motono C, Suwa M, Nakai K.
Protein Science.
2005 May 9;
[Epub ahead of print]
Novel and economical purification of recombinant proteins: Intein-mediated protein purification using in vivo polyhydroxybutyrate (PHB) matrix association. Banki MR, Gerngross TU, Wood DW.
2005 May 19;
[Epub ahead of print]
Statistical analysis and prediction of protein-protein interfaces. Bordner AJ, Abagyan R.
2005 May 11;
[Epub ahead of print]
Improvements in two-dimensional gel electrophoresis by utilizing a low cost "in-house" neutral pH sodium dodecyl sulfate-polyacrylamide gel electrophoresis system. Graham DR, Garnham CP, Fu Q, Robbins J, Van Eyk JE.
2005 May 4;
[Epub ahead of print]
A novel approach to protein expression profiling using antibody microarrays combined with surface plasmon resonance technology. Usui-Aoki K, Shimada K, Nagano M, Kawai M, Koga H.
2005 May 4;
[Epub ahead of print]
Ultra-high sensitivity multi-photon detection imaging in proteomics analyses. Kleiner O, Price DA, Ossetrova N, Osetrov S, Volkovitsky P, Drukier AK, Godovac-Zimmermann J.
2005 May 9;
[Epub ahead of print]
Comparison of protein and peptide prefractionation methods for the shotgun proteomic analysis of Synechocystis sp. PCC 6803. Gan CS, Reardon KF, Wright PC.
2005 May 5;
[Epub ahead of print]
Community Proteomics of a Natural Microbial Biofilm. Ram RJ, Verberkmoes NC, Thelen MP, Tyson GW, Baker BJ, Blake Ii RC, Shah M, Hettich RL, Banfield JF.
Toxicology Letters.
2005 Apr 30;
[Epub ahead of print]
A novel method for generation of signature networks as biomarkers from complex high throughput data. Nikolsky Y, Ekins S, Nikolskaya T, Bugrim A.
The Scan

Genetic Tests Lead to Potential Prognostic Variants in Dutch Children With Dilated Cardiomyopathy

Researchers in Circulation: Genomic and Precision Medicine found that the presence of pathogenic or likely pathogenic variants was linked to increased risk of death and poorer outcomes in children with pediatric dilated cardiomyopathy.

Fragile X Syndrome Mutations Found With Comprehensive Testing Method

Researchers in Clinical Chemistry found fragile X syndrome expansions and other FMR1 mutations with ties to the intellectual disability condition using a long-range PCR and long-read sequencing approach.

Team Presents Strategy for Speedy Species Detection in Metagenomic Sequence Data

A computational approach presented in PLOS Computational Biology produced fewer false-positive species identifications in simulated and authentic metagenomic sequences.

Genetic Risk Factors for Hypertension Can Help Identify Those at Risk for Cardiovascular Disease

Genetically predicted high blood pressure risk is also associated with increased cardiovascular disease risk, a new JAMA Cardiology study says.