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Recent Proteomics Papers of Note: Jul 8, 2005

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Recent Proteomics Papers of Note
Journal
Title
Authors
American Journal of Nephrology.
2005 Jun 16;25(4):318-326
[Epub ahead of print]
Early Prediction of Acute Renal Injury Using Urinary Proteomics. Nguyen MT, Ross GF, Dent CL, Devarajan P.

Bioinformatics.
2005 Jun 1;21 Suppl 1:i328-i337.

In silico identification of functional regions in proteins. Nimrod G, Glaser F, Steinberg D, Ben-Tal N, Pupko T.
Cancer Research.
2005 Jun 15;65(12):5112-22.
Heightened expression of CTCF in breast cancer cells is associated with resistance to apoptosis. Docquier F, Farrar D, D'Arcy V, Chernukhin I, Robinson AF, Loukinov D, Vatolin S, Pack S, Mackay A, Harris RA, Dorricott H, O'Hare MJ, Lobanenkov V, Klenova E.
Current Biology.
2005 Jun 21;15(12):1090-8.
Proteomic analysis of isolated chlamydomonas centrioles reveals orthologs of ciliary-disease genes. Keller LC, Romijn EP, Zamora I, Yates JR 3rd, Marshall WF.
Electrophoresis.
2005 Jun 20;
[Epub ahead of print]
Quantitative detection of phosphoproteins by combination of two-dimensional difference gel electrophoresis and phosphospecific fluorescent staining. Stasyk T, Morandell S, Bakry R, Feuerstein I, Huck CW, Stecher G, Bonn GK, Huber LA.
Electrophoresis.
2005 Jun 20;
[Epub ahead of print]
Decoding two-dimensional polyacrylamide gel electrophoresis complex maps by autocovariance function: A simplified approach useful for proteomics. Pietrogrande MC, Marchetti N, Tosi A, Dondi F, Righetti PG.
Electrophoresis.
2005 Jun;26(12):2450-60.
"LANESPECTOR", a tool for membrane proteome profiling based on sodium dodecyl sulfate-polyacrylamide gel electrophoresis/liquid chromatography — tandem mass spectrometry analysis: Application to Listeria monocytogenes membrane proteins. Wehmhoner D, Dieterich G, Fischer E, Baumgartner M, Wehland J, Jansch L.
Journal of Proteome Research.
2005 May-Jun;4(3):748-57.
Proteomic profiling of erythrocyte proteins by proteolytic digestion chip and identification using two-dimensional electrospray ionization tandem mass spectrometry. Tyan YC, Jong SB, Liao JD, Liao PC, Yang MH, Liu CY, Klauser R, Himmelhaus M, Grunze M.
Journal of Proteome Research.
2005 May-Jun;4(3):768-88.
Proteome analysis of primary neurons and astrocytes from rat cerebellum. Yang JW, Rodrigo R, Felipo V, Lubec G.
Journal of Proteome Research.
2005 May-Jun;4(3):801-8.
Global proteome discovery using an online three-dimensional LC-MS/MS. Wei J, Sun J, Yu W, Jones A, Oeller P, Keller M, Woodnutt G, Short JM.
Journal of Proteome Research.
2005 May-Jun;4(3):998-1005.
Integrated approach for manual evaluation of peptides identified by searching protein sequence databases with tandem mass spectra. Chen Y, Kwon SW, Kim SC, Zhao Y.
Journal of the American Society for Mass Spectrometry.
2005 Jun 23;
[Epub ahead of print]
Quantitative Analysis of the Low Molecular Weight Serum Proteome Using (18)O Stable Isotope Labeling in a Lung Tumor Xenograft Mouse Model. Hood BL, Lucas DA, Kim G, Chan KC, Blonder J, Issaq HJ, Veenstra TD, Conrads TP, Pollet I, Karsan A.
Molecular and Cellular Proteomics.
2005 Jun 14;
[Epub ahead of print]
Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein. Ishihama Y, Oda Y, Tabata T, Sato T, Nagasu T, Rappsilber J, Mann M.
Molecular and Cellular Proteomics.
2005 Jun 15;
[Epub ahead of print]
Expression clustering reveals detailed co-expression patterns of functionally related proteins during B cell differentiation:A proteomics study using a combination of 1D gel electrophoresis, LC-MS/MS and SILAC. Romijn EP, Christis C, Wieffer M, Gouw JW, Fullaondo A, van der Sluijs P, Braakman I, Heck AJ.
Molecular and Cellular Proteomics.
2005 Jun 21;
[Epub ahead of print]
Analysis of intimal proteoglycans in atherosclerosis-prone and atherosclerosis-resistant human arteries by mass spectrometry. Talusan P, Bedri S, Yang S, Kattapuram T, Silva N, Roughley PJ, Stone JR.
Molecular and Cellular Proteomics.
2005 Jun 22;
[Epub ahead of print]
Proteomics analysis of cellular response to osmotic stress in TALH-cells. Dihazi H, Rahman AA, Agarwal NK, Doncheva Y, Muller GA.
Molecular and Cellular Proteomics.
2005 Jun 23;
[Epub ahead of print]
Comparison of label free methods for quantifying human proteins by shotgun proteomics. Old WM, Meyer-Arendt K, Aveline-Wolf L, Pierce KG, Mendoza A, Sevinsky JR, Resing KA, Ahn NG.
Neurobiology of Aging.
2005 Jun 22;
[Epub ahead of print]
Quantitative proteomics analysis of differential protein expression and oxidative modification of specific proteins in the brains of old mice. Poon HF, Vaishnav RA, Getchell TV, Getchell ML, Butterfield DA.
Nucleic Acids Research.
2005 Jul 1;33(Web Server issue):W376-81.
DeNovoID: a web-based tool for identifying peptides from sequence and mass tags deduced from de novo peptide sequencing by mass spectroscopy. Halligan BD, Ruotti V, Twigger SN, Greene AS.
Proteome Science.
2005 Jun 17;3(1):7
[Epub ahead of print]
Cognate Peptide-Receptor Ligand Mapping by Directed Phage Display. Stratmann T, Kang AS.
Proteomics.
2005 Jun 28;5(10):2561-2569
[Epub ahead of print]
Proteomics of the rat gut: Analysis of the myenteric plexus-longitudinal muscle preparation. Marvin-Guy L, Lopes LV, Affolter M, Courtet-Compondu MC, Wagniere S, Bergonzelli GE, Fay LB, Kussmann M.
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