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Recent Proteomics Papers of Note
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Authors
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| American Journal of Nephrology. 2005 Jun 16;25(4):318-326 [Epub ahead of print] |
Early Prediction of Acute Renal Injury Using Urinary Proteomics. | Nguyen MT, Ross GF, Dent CL, Devarajan P. |
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Bioinformatics. |
In silico identification of functional regions in proteins. | Nimrod G, Glaser F, Steinberg D, Ben-Tal N, Pupko T. |
| Cancer Research. 2005 Jun 15;65(12):5112-22. |
Heightened expression of CTCF in breast cancer cells is associated with resistance to apoptosis. | Docquier F, Farrar D, D'Arcy V, Chernukhin I, Robinson AF, Loukinov D, Vatolin S, Pack S, Mackay A, Harris RA, Dorricott H, O'Hare MJ, Lobanenkov V, Klenova E. |
| Current Biology. 2005 Jun 21;15(12):1090-8. |
Proteomic analysis of isolated chlamydomonas centrioles reveals orthologs of ciliary-disease genes. | Keller LC, Romijn EP, Zamora I, Yates JR 3rd, Marshall WF. |
| Electrophoresis. 2005 Jun 20; [Epub ahead of print] |
Quantitative detection of phosphoproteins by combination of two-dimensional difference gel electrophoresis and phosphospecific fluorescent staining. | Stasyk T, Morandell S, Bakry R, Feuerstein I, Huck CW, Stecher G, Bonn GK, Huber LA. |
| Electrophoresis. 2005 Jun 20; [Epub ahead of print] |
Decoding two-dimensional polyacrylamide gel electrophoresis complex maps by autocovariance function: A simplified approach useful for proteomics. | Pietrogrande MC, Marchetti N, Tosi A, Dondi F, Righetti PG. |
| Electrophoresis. 2005 Jun;26(12):2450-60. |
"LANESPECTOR", a tool for membrane proteome profiling based on sodium dodecyl sulfate-polyacrylamide gel electrophoresis/liquid chromatography — tandem mass spectrometry analysis: Application to Listeria monocytogenes membrane proteins. | Wehmhoner D, Dieterich G, Fischer E, Baumgartner M, Wehland J, Jansch L. |
| Journal of Proteome Research. 2005 May-Jun;4(3):748-57. |
Proteomic profiling of erythrocyte proteins by proteolytic digestion chip and identification using two-dimensional electrospray ionization tandem mass spectrometry. | Tyan YC, Jong SB, Liao JD, Liao PC, Yang MH, Liu CY, Klauser R, Himmelhaus M, Grunze M. |
| Journal of Proteome Research. 2005 May-Jun;4(3):768-88. |
Proteome analysis of primary neurons and astrocytes from rat cerebellum. | Yang JW, Rodrigo R, Felipo V, Lubec G. |
| Journal of Proteome Research. 2005 May-Jun;4(3):801-8. |
Global proteome discovery using an online three-dimensional LC-MS/MS. | Wei J, Sun J, Yu W, Jones A, Oeller P, Keller M, Woodnutt G, Short JM. |
| Journal of Proteome Research. 2005 May-Jun;4(3):998-1005. |
Integrated approach for manual evaluation of peptides identified by searching protein sequence databases with tandem mass spectra. | Chen Y, Kwon SW, Kim SC, Zhao Y. |
| Journal of the American Society for Mass Spectrometry. 2005 Jun 23; [Epub ahead of print] |
Quantitative Analysis of the Low Molecular Weight Serum Proteome Using (18)O Stable Isotope Labeling in a Lung Tumor Xenograft Mouse Model. | Hood BL, Lucas DA, Kim G, Chan KC, Blonder J, Issaq HJ, Veenstra TD, Conrads TP, Pollet I, Karsan A. |
| Molecular and Cellular Proteomics. 2005 Jun 14; [Epub ahead of print] |
Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein. | Ishihama Y, Oda Y, Tabata T, Sato T, Nagasu T, Rappsilber J, Mann M. |
| Molecular and Cellular Proteomics. 2005 Jun 15; [Epub ahead of print] |
Expression clustering reveals detailed co-expression patterns of functionally related proteins during B cell differentiation:A proteomics study using a combination of 1D gel electrophoresis, LC-MS/MS and SILAC. | Romijn EP, Christis C, Wieffer M, Gouw JW, Fullaondo A, van der Sluijs P, Braakman I, Heck AJ. |
| Molecular and Cellular Proteomics. 2005 Jun 21; [Epub ahead of print] |
Analysis of intimal proteoglycans in atherosclerosis-prone and atherosclerosis-resistant human arteries by mass spectrometry. | Talusan P, Bedri S, Yang S, Kattapuram T, Silva N, Roughley PJ, Stone JR. |
| Molecular and Cellular Proteomics. 2005 Jun 22; [Epub ahead of print] |
Proteomics analysis of cellular response to osmotic stress in TALH-cells. | Dihazi H, Rahman AA, Agarwal NK, Doncheva Y, Muller GA. |
| Molecular and Cellular Proteomics. 2005 Jun 23; [Epub ahead of print] |
Comparison of label free methods for quantifying human proteins by shotgun proteomics. | Old WM, Meyer-Arendt K, Aveline-Wolf L, Pierce KG, Mendoza A, Sevinsky JR, Resing KA, Ahn NG. |
| Neurobiology of Aging. 2005 Jun 22; [Epub ahead of print] |
Quantitative proteomics analysis of differential protein expression and oxidative modification of specific proteins in the brains of old mice. | Poon HF, Vaishnav RA, Getchell TV, Getchell ML, Butterfield DA. |
| Nucleic Acids Research. 2005 Jul 1;33(Web Server issue):W376-81. |
DeNovoID: a web-based tool for identifying peptides from sequence and mass tags deduced from de novo peptide sequencing by mass spectroscopy. | Halligan BD, Ruotti V, Twigger SN, Greene AS. |
| Proteome Science. 2005 Jun 17;3(1):7 [Epub ahead of print] |
Cognate Peptide-Receptor Ligand Mapping by Directed Phage Display. | Stratmann T, Kang AS. |
| Proteomics. 2005 Jun 28;5(10):2561-2569 [Epub ahead of print] |
Proteomics of the rat gut: Analysis of the myenteric plexus-longitudinal muscle preparation. | Marvin-Guy L, Lopes LV, Affolter M, Courtet-Compondu MC, Wagniere S, Bergonzelli GE, Fay LB, Kussmann M. |
Recent Proteomics Papers of Note: Jul 8, 2005
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