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Recent Proteomics Papers of Note: Jan 12, 2006

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Recent Proteomics Papers of Note
Journal Title Authors
Analytical and Bioanalytical Chemistry.
2006 Jan 3;:1-13
[Epub ahead of print]
Use of a proteomics approach to identify favorable conditions for production of good quality lambskin leather. Deb Choudhury S, Allsop T, Passman A, Norris GE.
Applied and Environonmental Microbiolology.
2006 Jan;72(1):836-47.
Transcriptomic and proteomic approach for understanding the molecular basis of adaptation of Saccharomyces cerevisiae to wine fermentation. Zuzuarregui A, Monteoliva L, Gil C, Del Olmo ML.
Journal of Clinical Investigation.
2006 Jan;116(1):271-84
Differential exoprotease activities confer tumor-specific serum peptidome patterns. Villanueva J, Shaffer DR, Philip J, Chaparro CA, Erdjument-Bromage H, Olshen AB, Fleisher M, Lilja H, Brogi E, Boyd J, Sanchez-Carbayo M, Holland EC, Cordon-Cardo C, Scher HI, Tempst P.
Journal of Proteome Research.
2006 Jan 6;5(1):155-163.
In-Gel Stable-Isotope Labeling (ISIL): a strategy for mass spectrometry-based relative quantification. Asara JM, Zhang X, Zheng B, Christofk HH, Wu N, Cantley LC.
Journal of Proteome Research.
2006 Jan 6;5(1):177-182.
Proteome analysis of isolated perfused organ effluent as a novel model for protein biomarker discovery. Koomen JM, Wilson CR, Guthrie P, Androlewicz MJ, Kobayashi R, Taegtmeyer H.
Journal of Proteome Research.
2006 Jan 6;5(1):76-87.
Mass spectrometry-based proteomics combined with bioinformatic tools for bacterial classification. Dworzanski JP, Deshpande SV, Chen R, Jabbour RE, Snyder AP, Wick CH, Li L.
Journal of Proteome Research.
2006 Jan-Feb;5(1):112-21.
Computational Proteomics Analysis System (CPAS): An extensible, open-source analytic system for evaluating and publishing proteomic data and high throughput biological experiments. Rauch A, Bellew M, Eng J, Fitzgibbon M, Holzman T, Hussey P, Igra M, Maclean B, Lin CW, Detter A, Fang R, Faca V, Gafken P, Zhang H, Whitaker J, States D, Hanash S, Paulovich A, McIntosh MW.
Journal of Proteome Research.
2006 Jan-Feb;5(1):127-34.
Quantitative phosphoproteomic analysis of the tumor necrosis factor pathway. Cantin GT, Venable JD, Cociorva D, Yates JR 3rd.
Journal of Proteome Research.
2006 Jan-Feb;5(1):135-46.
Integration of multidimensional chromatographic protein separations with a combined "top-down" and "bottom-up" proteomic strategy. Millea KM, Krull IS, Cohen SA, Gebler JC, Berger SJ.
Journal of Proteome Research.
2006 Jan-Feb;5(1):170-6.
One-step fractionation of complex proteomes enables detection of low abundant analytes using antibody-based microarrays. Ingvarsson J, Lindstedt M, Borrebaeck CA, Wingren C.
Journal of Proteome Research.
2006 Jan-Feb;5(1):183-91.
Systematic evaluation of sample preparation methods for gel-based human urinary proteomics: quantity, quality, and variability. Thongboonkerd V, Chutipongtanate S, Kanlaya R.
Journal of Proteome Research.
2006 Jan-Feb;5(1):54-63.
Quantitative proteomic analysis of drug-induced changes in mycobacteria. Hughes MA, Silva JC, Geromanos SJ, Townsend CA.
Molecular & Cellular Proteomics.
2006 Jan 5;
[Epub ahead of print]
Simultaneous qualitative and quantitative analysis of the E. coli proteome: A sweet tale. Silva JC, Denny R, Dorschel C, Gorenstein MV, Li GZ, Richardson K, Wall D, Geromanos SJ.
Molecular & Cellular Proteomics.
2006 Jan 5;
[Epub ahead of print]
Identification of sites of mannose 6-phosphorylation on lysosomal proteins. Sleat DE, Zheng H, Qian M, Lobel P.
Molecular & Cellular Proteomics.
2006 Jan;5(1):26-34.
Epub 2005 Sep 27.
Multidimensional liquid chromatography separation of intact proteins by chromatographic focusing and reversed phase of the human serum proteome: optimization and protein database. Sheng S, Chen D, Van Eyk JE.
Parasitology.
2006 Jan 3;:1-9
[Epub ahead of print]
A preliminary proteomic survey of the in vitro excretory/secretory products of fourth-stage larval and adult Teladorsagia circumcincta. Craig H, Wastling JM, Knox DP.
Proteomics.
2006 Jan 9;
[Epub ahead of print]
Proteomic profiling of hepatocellular carcinoma in Chinese cohort reveals heat-shock proteins (Hsp27, Hsp70, GRP78) up-regulation and their associated prognostic values. Luk JM, Lam CT, Siu AF, Lam BY, Ng IO, Hu MY, Che CM, Fan ST.
Proteomics.
2006 Jan 9;
[Epub ahead of print]
Search for the tumor-related proteins of transition cell carcinoma in Taiwan by proteomic analysis. Sheng KH, Yao YC, Chuang SS, Wu H, Wu TF.
Proteomics.
2006 Jan 9;
[Epub ahead of print]
Systems level analysis of protein synthesis patterns associated with bacterial growth and metabolic transitions. Vohradsky J, Thompson CJ.
Proteomics.
2006 Jan 9;6(1):4-8
[Epub ahead of print]
Guidelines for the next 10 years of proteomics. Wilkins MR, Appel RD, Van Eyk JE, Chung MC, Gorg A, Hecker M, Huber LA, Langen H, Link AJ, Paik YK, Patterson SD, Pennington SR, Rabilloud T, Simpson RJ, Weiss W, Dunn MJ.
Rapid Communications in Mass Spectrometry.
2006 Jan 5;20(3):447-455
[Epub ahead of print]
Identification of peptides in antimicrobial fractions of cheese extracts by electrospray ionization ion trap mass spectrometry coupled to a two-dimensional liquid chromatographic separation. Losito I, Carbonara T, De Bari MD, Gobbetti M, Palmisano F, Rizzello CG, Zambonin PG.
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