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Recent Proteomics Papers of Note: May 18, 2006

Recent Proteomics Papers of Note
Journal Title Authors
Analytical Chemistry.
2006 May 15;78(10):3406-16.
Peak capacity optimization of peptide separations in reversed-phase gradient elution chromatography: fixed column format. Wang X, Stoll DR, Schellinger AP, Carr PW.
Analytical Chemistry.
2006 May 15;78(10):3417-23.
Mass defect labeling of cysteine for improving peptide assignment in shotgun proteomic analyses. Hernandez H, Niehauser S, Boltz SA, Gawandi V, Phillips RS, Amster IJ.
Cancer Metastasis Review.
2006 Mar;25(1):69-75.
Degradomics: Systems biology of the protease web. Pleiotropic roles of MMPs in cancer. Overall CM, Dean RA.
Cancer Research.
2006 May 1;66(9):4795-801.
The regulation of exosome secretion: a novel function of the p53 protein. Yu X, Harris SL, Levine AJ.
Clinical and Experimental Dermatology.
2006 May;31(3):445-8.
Proteomic analysis of suction blister fluid isolated from human skin. Macdonald N, Cumberbatch M, Singh M, Moggs JG, Orphanides G, Dearman RJ, Griffiths CE, Kimber I.
Genome Biology.
2006 Apr 28;7(4):R35
[Epub ahead of print]
Novel gene and gene model detection using a whole genome open reading frame analysis in proteomics. Fermin D, Allen BB, Blackwell TW, Menon R, Adamski M, Xu Y, Ulintz P, Omenn GS, States DJ.
Genomics Proteomics Bioinformatics.
2005 Nov;3(4):238-41.
Constructing support vector machine ensembles for cancer classification based on proteomic profiling. Mao Y, Zhou XB, Pi DY, Sun YX.
International Journal of Gynecological Cancer.
2006 Mar-Apr;16(2):690-7.
Analysis of differential protein expression by cisplatin treatment in cervical carcinoma cells. Yim EK, Lee KH, Kim CJ, Park JS.
Journal of Bacteriology.
2006 May;188(10):3551-71.
Differential proteomic analysis of the Bacillus anthracis secretome: Distinct plasmid and chromosome CO2-dependent cross talk mechanisms modulate extracellular proteolytic activities. Chitlaru T, Gat O, Gozlan Y, Ariel N, Shafferman A.
Journal of Biological Chemistry.
2006 May 8;
[Epub ahead of print]
Reversible post-translational modification of proteins by nitrated fatty acids in vivo. Batthyany C, Schopfer FJ, Baker PR, Duran R, Baker LM, Huang Y, Cervenansky C, Braunchaud BP, Freeman BA.
Journal of Neural Transmission.
2006 May 5;
[Epub ahead of print]
Subcellular proteomics reveals neuromelanin granules to be a lysosome-related organelle. Tribl F, Marcus K, Meyer HE, Bringmann G, Gerlach M, Riederer P
Journal of Proteome Reseach.
2006 May;5(5):1091-7.
More sensitive and quantitative proteomic measurements using very low flow rate porous silica monolithic LC columns with electrospray ionization-mass spectrometry. Luo Q, Tang K, Yang F, Elias A, Shen Y, Moore RJ, Zhao R, Hixson KK, Rossie SS, Smith RD.
Journal of Proteome Research.
2006 May 5;5(5):1082-1090.
Comparative proteomics of ovarian epithelial tumors. An HJ, Kim DS, Park YK, Kim SK, Choi YP, Kang S, Ding B, Cho NH.
Journal of Proteome Research.
2006 May;5(5):1214-23.
Label-free protein quantification using LC-coupled ion trap or FT mass spectrometry: Reproducibility, linearity, and application with complex proteomes. Wang G, Wu WW, Zeng W, Chou CL, Shen RF.
Molecular & Cellular Proteomics.
2006 Apr 28;
[Epub ahead of print]
Proteomics of plant detergent resistant membranes. Morel J, Claverol S, Mongrand S, Furt F, Fromentin J, Bessoule JJ, Blein JP, Simon-Plas F.
Molecular & Cellular Proteomics.
2006 May 8;
[Epub ahead of print]
Analysis of the Salmonella typhimurium proteome through environmental response towards infectious conditions. Adkins JN, Mottaz HM, Norbeck AD, Gustin JK, Rue J, Clauss TR, Purvine SO, Rodland K, Heffron F, Smith RD.
Molecular & Cellular Proteomics.
2006 May 9;
[Epub ahead of print]
High dynamic range characterization of the trauma patient plasma proteome. Liu T, Qian WJ, Gritsenko MA, Xiao W, Moldawer LL, Kaushal A, Monroe ME, Vamum SM, Moore RJ, Purvine SO, Maier RV, Davis RW, Tompkins RG, Camp DG 2nd, Smith RD.
Molecular & Cellular Proteomics.
2006 May 9;
[Epub ahead of print]
Establishment of a reliable method for direct proteome characterization of human articular cartilage. Vincourt JB, Lionneton F, Kratassiouk G, Guillemin F, Netter P, Mainard D, Magdalou J.
Plant Physiology.
2006 May 5;
[Epub ahead of print]
Proteomic investigation of the effect of salicylic acid on Arabidopsis seed germination and establishment of early defense mechanisms. Rajjou L, Belghazi M, Huguet R, Robin C, Moreau A, Job C, Job D.
PLoS Genetics.
2006 Apr;2(4):e52.
Epub 2006 Apr 28.
The abundance of short proteins in the mammalian proteome. Frith MC, Forrest AR, Nourbakhsh E, Pang KC, Kai C, Kawai J, Carninci P, Hayashizaki Y, Bailey TL, Grimmond SM.
2006 May 11;
[Epub ahead of print]
Identification of new Golgi complex specific proteins by direct organelle proteomic analysis. Takatalo MS, Kouvonen P, Corthals G, Nyman TA, Ronnholm RH.
2006 May;6(9):2634-7.
Bridging proteomics and medical science — the 5(th) HUPO Brain Proteome workshop in Dublin, Ireland. Hamacher M, Stephan C, Palacios Bustamante N, van Hall A, Marcus K, Reidegeld KA, Gantly A, Pennington SR, Dunn MJ, Meyer HE.
Urologic Oncology.
2006 May-Jun;24(3):274-5.
Surveillance for recurrent bladder cancer using a point-of-care proteomic assay. Grossman HB, Soloway M, Messing E, Katz G, Stein B, Kassabian V, Shen Y, See WA.
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