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Recent Proteomics Papers of Note: Dec 23, 2005

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Recent Proteomics Papers of Note
Journal Title Authors
Bioinformatics.
2005 Dec 13;
[Epub ahead of print]
Quality classification of tandem mass spectrometry data. Salmi J, Moulder R, Filen JJ, Nevalainen OS, Nyman TA, Lahesmaa R, Aittokallio T.
Carcinogenesis.
2005 Dec 12;
[Epub ahead of print]
A proteomic investigation into a human gastric cancer cell line BGC823 treated with diallyl trisulfide. Li N, Guo R, Li W, Shao J, Li S, Zhao K, Chen X, Xu N, Liu S, Lu Y.
Circulation.
2005 Dec 20;112(25):3868-75. Epub 2005 Dec 12.
Metabolomic identification of novel biomarkers of myocardial ischemia. Sabatine MS, Liu E, Morrow DA, Heller E, McCarroll R, Wiegand R, Berriz GF, Roth FP, Gerszten RE.
Electrophoresis.
2005 Dec 15;26(24):4575-4589
[Epub ahead of print]
Multiplex multidimensional nanoLC-MS system for targeted proteomic analyses. Bonneil E, Tessier S, Carrier A, Thibault P.
Electrophoresis.
2005 Dec 16;
[Epub ahead of print]
Dynamics of Arabidopsis thaliana soluble proteome in response to different nutrient culture conditions. Sarry JE, Kuhn L, Le Lay P, Garin J, Bourguignon J.
Journal of
Alzheimers Disease.

2005 Dec;8(3):227-41.
Using proteomics and network analysis to elucidate the consequences of synaptic protein oxidation in a PS1+AbetaPP mouse model of Alzheimer's disease. Soreghan BA, Lu BW, Thomas SN, Duff K, Rakhmatulin EA, Nikolskaya T, Chen T, Yang AJ.
Journal of Immunological Methods.
2005 Nov 21;
[Epub ahead of print]
Multiple cellular antigen detection by ICP-MS. Ornatsky O, Baranov VI, Bandura DR, Tanner SD, Dick J.
Journal of Korean Medical Science.
2005 Dec;20(6):1000-5.
Investigation of early protein changes in the urinary bladder following partial bladder outlet obstruction by proteomic approach. Kim HJ, Sohng I, Kim DH, Lee DC, Hwang CH, Park JY, Ryu JW.
Journal of Proteome Research.
2005 Dec 12;4(6):2404-2411.
Efficient Method for the Proteomic Analysis of Fixed and Embedded Tissues. Palmer-Toy DE, Krastins B, Sarracino DA, Nadol JB Jr, Merchant SN.
Journal of Proteome Research.
2005 Nov-Dec;4(6):2338-47.
VEMS 3.0: Algorithms and Computational Tools for Tandem Mass Spectrometry Based Identification of Post-translational Modifications in Proteins. Matthiesen R, Trelle MB, Hojrup P, Bunkenborg J, Jensen ON.
Journal of Proteome Research.
2005 Nov-Dec;4(6):2369-74.
"Plasmo2D": An Ancillary Proteomic Tool to Aid Identification of Proteins from Plasmodium falciparum. Khachane A, Kumar R, Jain S, Jain S, Banumathy G, Singh V, Nagpal S, Tatu U.
Journal of Proteome Research.
2005 Nov-Dec;4(6):2412-9.
A Double-Vented Tetraphasic Continuous Column Approach to MuDPIT Analysis on Long Capillary Columns Demonstrates Superior Proteomic Coverage. Guzzetta AW, Chien AS.
Liver International: Official journal of the International Association for the Study of the Liver.
2005 Dec;25(6):1259-69.
Altered protein expression and protein nitration pattern during d-galactosamine-induced cell death in human hepatocytes: a proteomic analysis. Rodriguez-Ariza A, Lopez-Sanchez LM, Gonzalez R, Corrales FJ, Lopez P, Bernardos A, Muntane J.
Methods in Molecular Biology.
2005;310:197-216.
Fabrication of protein function microarrays for systems-oriented proteomic analysis. Blackburn JM, Hart DJ.
Molecular & Cellular Proteomics.
2005 Dec 12;
[Epub ahead of print]
Dynamic spectrum quality assessment and iterative computational analysis of shotgun proteomic data: toward more efficient identification of post-translational modifications, sequence polymorphisms, and novel peptides. Nesvizhskii AI, Roos FF, Grossmann J, Vogelzang M, Eddes JS, Gruissem W, Baginsky S, Aebersold R.
Neuroscience.
2005 Dec 6;
[Epub ahead of print]
Proteomic analysis of rat hippocampus after repeated psychosocial stress. Carboni L, Piubelli C, Pozzato C, Astner H, Arban R, Righetti PG, Hamdan M, Domenici E.
Parasitology.
2005 Dec;131
(Pt 6):867-79.
Proteomic analysis of a 120 kDa protein complex in cyst fluid of Taenia solium metacestode and preliminary evaluation of its value for the serodiagnosis of neurocysticercosis. Lee EG, Bae YA, Jeong YT, Chung JY, Je EY, Kim SH, Na BK, Ju JW, Kim TS, Ma L, Cho SY, Kong Y.
Proteomics.
2005 Dec 8;
[Epub ahead of print]
A robust meta-classification strategy for cancer detection from MS data. Bhanot G, Alexe G, Venkataraghavan B, Levine AJ.
Proteomics.
2005 Dec 9;
[Epub ahead of print]
Proteome analysis of hepatocellular carcinoma by laser capture microdissection. Ai J, Tan Y, Ying W, Hong Y, Liu S, Wu M, Qian X, Wang H.
Proteomics.
2005 Dec 9;
[Epub ahead of print]
Proteome analysis of human lung squamous carcinoma. Li C, Xiao Z, Chen Z, Zhang X, Li J, Wu X, Li X, Yi H, Li M, Zhu G, Liang S.
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