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Recent Proteomics Papers of Note: Dec 9, 2005

Recent Proteomics Papers of Note
Analytical Chemistry
2005 Dec 1;77(23):7594-604.
Enrichment and Identification of Cysteine-Containing Peptides from Tryptic Digests of Performic Oxidized Proteins by Strong Cation Exchange LC and MALDI-TOF/TOF MS.
Dai J, Wang J, Zhang Y, Lu Z, Yang B, Li X,
Cai Y, Qian X.
Analytical Chemistry
2005 Dec 1;77(23):7709-16.
Combining Peptide Modeling and Capillary Electrophoresis-Mass Spectrometry for Characterization of Enzymes Cleavage Patterns: Recombinant versus Natural Bovine Pepsin A.
Simo C, Gonzalez R, Barbas C, Cifuentes A.
Analytical Chemistry
2005 Dec 1;77(23):7763-73.
Making Broad Proteome Protein Measurements in 1-5 min Using High-Speed RPLC Separations and High-Accuracy Mass Measurements.
Shen Y, Strittmatter EF, Zhang R, Metz TO, Moore RJ, Li F, Udseth HR, Smith RD, Unger KK, Kumar D, Lubda D.
Analytical Chemistry
2005 Dec 1;77(23):7783-95.
De Novo Sequencing of Neuropeptides Using Reductive Isotopic Methylation and Investigation of ESI QTOF MS/MS Fragmentation Pattern of Neuropeptides with N-Terminal Dimethylation.
Fu Q, Li L.
Analytical Chemistry
2005 Dec 1;77(23):7816-25.
Enhanced Characterization of Complex Proteomic Samples Using LC-MALDI MS/MS: Exclusion of Redundant Peptides from MS/MS Analysis in Replicate Runs.
Chen HS, Rejtar T, Andreev V, Moskovets E, Karger BL.
Applied Bioinformatics 2005;4(4):227-46.
Feature Selection for Classification of SELDI-TOF-MS Proteomic Profiles.
Hauskrecht M, Pelikan R, Malehorn DE, Bigbee WL, Lotze MT, Zeh HJ, Whitcomb DC, Lyons-Weiler J.
Arthritis and Rheumatism
2005 Nov 30;52(12):3801-3812
[Epub ahead of print]
Discovery of new rheumatoid arthritis biomarkers using the surface-enhanced laser desorption/ionization time-of-flight mass spectrometry ProteinChip approach.
de Seny D, Fillet M, Meuwis MA, Geurts P, Lutteri L, Ribbens C, Bours V, Wehenkel L, Piette J, Malaise M, Merville MP.
Clinical Chemistry and
Laboratory Medicine

Separation of human serum proteins using the Beckman-Coulter PF2Dtrade mark system: analysis of ion exchange-based first dimension chromatography.
Levreri I, Musante L, Petretto A, Bruschi M, Candiano G, Melioli G.
2005 Nov 28;26(23):4508-4520
[Epub ahead of print]
Software-induced variance in two-dimensional gel electrophoresis image analysis. Wheelock AM,
Buckpitt AR.
Experimental Gerontology
2005 Nov 20;
[Epub ahead of print]
Estimation of the mtDNA mutation rate in aging mice by proteome analysis and mathematical modeling. Mao L, Zabel C, Wacker MA, Nebrich G, Sagi D, Schrade P, Bachmann S, Kowald A, Klose J.
Journal of Immunology
2005 Dec 1;175(11):7560-7.
Cationic Polypeptides Are Required for Anti-HIV-1 Activity of Human Vaginal Fluid.
Venkataraman N, Cole AL, Svoboda P, Pohl J, Cole AM.
Journal of Neurochemistry
2005 Dec;95(5):1461-71.
"Proteomic profiling of cerebrospinal fluid identifies biomarkers for amyotrophic lateral sclerosis. "
Ranganathan S,
Williams E, Ganchev P, Gopalakrishnan V, Lacomis D, Urbinelli L, Newhall K, Cudkowicz ME, Brown RH Jr, Bowser R.
Journal of Nutrition
2005 Dec;135(12):2953S-9S.
Chemoprevention of breast cancer, proteomic discovery of genistein action in the rat mammary gland.
Rowell C, Carpenter DM, Lamartiniere CA.
Molecular & Cellular Proteomics
2005 Nov 28;
[Epub ahead of print]
Comparative proteomic analysis provides new insights into chilling stress responses in rice.
Yan SP, Zhang QY,
Tang ZC, Su WA,
Sun WN.
Molecular & Cellular Proteomics
2005 Nov 28;
[Epub ahead of print]
Surfactant sodium lauryl sulfate enhances skin vaccination: Molecular characterization via a novel technique using ultrafiltration capillaries and mass spectrometric proteomics.
Huang CM, Wang CC, Kawai M, Barnes S, Elmets CA.
Molecular & Cellular Proteomics
2005 Nov 28;
[Epub ahead of print]
Apocrine cysts of the breast: Biomarkers, origin, enlargement, and relation with cancer phenotype.
Celis JE, Gromov P, Moreira JM, Cabezon T, Friis E, Vejborg IM, Proess G, Rank F, Gromova I.
Molecular Diversity
Molecular diversity of rat brain proteins as revealed by proteomic analysis.
Yang JW, Juranville JF, Hoger H, Fountoulakis M, Lubec G.
Molecular Microbiology
2005 Dec;58(5):1430-40.
A proteomic analysis of penicillin resistance in Streptococcus pneumoniae reveals a novel role for PstS, a subunit of the phosphate ABC transporter.
Soualhine H, Brochu V, Menard F, Papadopoulou B, Weiss K, Bergeron MG, Legare D, Drummelsmith J, Ouellette M.
2005 Dec 1;438(7068):679-84.
Global analysis of protein phosphorylation in yeast. Ptacek J, Devgan G, Michaud G, Zhu H, Zhu X, Fasolo J, Guo H, Jona G, Breitkreutz A, Sopko R, McCartney RR, Schmidt MC, Rachidi N, Lee SJ, Mah AS, Meng L, Stark MJ, Stern DF, De Virgilio C, Tyers M, Andrews B, Gerstein M, Schweitzer B, Predki PF, Snyder M.
Pathology, Research and Practice
Epub 2005 Oct 24.
SELDI-MS-based expression profiling of ductal invasive and lobular invasive human breast carcinomas. Traub F, Feist H,
Kreipe HH, Pich A.
Protein and Peptide Letters
2005 Nov;12(8):813-7.
Proteome analysis of Nelore bull (Bos taurus indicus) seminal plasma. Assumpcao TI, Fontes W, Sousa MV,
Ricart CA.
2005 Nov 30;
[Epub ahead of print]
Large-scale prediction of disulphide bridges using kernel methods, two-dimensional recursive neural networks, and weighted graph matching. Cheng J, Saigo H,
Baldi P.
2005 Nov 30;
[Epub ahead of print]
Proteome analysis of combined effects of androgen and estrogen on the mouse mammary gland.
Zhang L, Liu X, Zhang J, Cao R, Lin Y, Xie J, Chen P, Sun Y, Li D, Liang S.
2005 Nov 30;
[Epub ahead of print]
Proteome analysis of human liver carcinoma Huh7 cells harboring hepatitis C virus subgenomic replicon.
Fang C, Yi Z, Liu F,
Lan S, Wang J, Lu H,
Yang P, Yuan Z.
The Scan

Positive Framing of Genetic Studies Can Spark Mistrust Among Underrepresented Groups

Researchers in Human Genetics and Genomics Advances report that how researchers describe genomic studies may alienate potential participants.

Small Study of Gene Editing to Treat Sickle Cell Disease

In a Novartis-sponsored study in the New England Journal of Medicine, researchers found that a CRISPR-Cas9-based treatment targeting promoters of genes encoding fetal hemoglobin could reduce disease symptoms.

Gut Microbiome Changes Appear in Infants Before They Develop Eczema, Study Finds

Researchers report in mSystems that infants experienced an enrichment in Clostridium sensu stricto 1 and Finegoldia and a depletion of Bacteroides before developing eczema.

Acute Myeloid Leukemia Treatment Specificity Enhanced With Stem Cell Editing

A study in Nature suggests epitope editing in donor stem cells prior to bone marrow transplants can stave off toxicity when targeting acute myeloid leukemia with immunotherapy.