Skip to main content
Premium Trial:

Request an Annual Quote

VLX Design Suite, StarBlast, DNALinux 0.3, Bioknoppix, Bio::Prospect::


Teranode has launched the VLX Design Suite, a set of design tools for laboratory and in silico research. The product suite includes three products: VLX Research Designer for designing laboratory processes; VLX Biological Modeler for modeling and simulating biological systems; and the VLX Workgroup Server, which provides multi-user server functionality. Teranode said that the products are being piloted at Pfizer, the Fred Hutchinson Cancer Research Center, and the University of Washington. VLX Research Designer and VLX Biological Modeler are available immediately for $1,000 per seat/per year. VLX Workgroup Server will be available in the first half of 2004 at a price to be announced. Academic and non-profit organizations are eligible for “significant discounts,” the company said.

DNAStar has scheduled a March release date for StarBlast, a tool that allows users to search DNA and protein sequence databases using a Windows or Macintosh desktop machine. StarBlast can be configured to run on a single laptop, within an Intranet, or over the Internet, the company said. DNAStar will provide a 30 percent discount off the StarBlast list price for customers who have current LaserGene or GenVision maintenance contracts, while all new DNAStar customers are eligible for an introductory 15 percent discount.

GenesDigitales of Quilmes, Argentina, has released DNALinux 0.3, a linux distribution oriented toward life science users. DNALinux, available at, includes bioinformatics software such as Blast, EMBOSS, and Hmmer, as well as genomic data for Arabidopsis, Drosophila, and Escherichia coli.

The University of Puerto Rico high-performance computing facility and the Puerto Rico Biomedical Research Infrastructure Network have also released a bioinformatics Linux distribution called Bioknoppix, which includes EMBOSS, Clustal, BioConductor, BioPerl, BioPython, and Rasmol, among other programs. It is available at

Bio::Prospect::, a Perl API for protein fold recognition with the Prospect Pro protein-threading application, is available at .pdf?download. The module, developed by the Genentech bioinformatics and protein engineering team, is available under the Academic Free License v. 2.0 (


Filed under

The Scan

Y Chromosome Study Reveals Details on Timing of Human Settlement in Americas

A Y chromosome-based analysis suggests South America may have first been settled more than 18,000 years ago, according to a new PLOS One study.

New Insights Into TP53-Driven Cancer

Researchers examine in Nature how TP53 mutations arise and spark tumor development.

Mapping Single-Cell Genomic, Transcriptomic Landscapes of Colorectal Cancer

In Genome Medicine, researchers present a map of single-cell genomic and transcriptomic landscapes of primary and metastatic colorectal cancer.

Expanded Genetic Testing Uncovers Hereditary Cancer Risk in Significant Subset of Cancer Patients

In Genome Medicine, researchers found pathogenic or likely pathogenic hereditary cancer risk variants in close to 17 percent of the 17,523 patients profiled with expanded germline genetic testing.