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SARS Bioinformatics, dbSNP, Journal of Bioinformatics and Computational Biology, AMD Core Math Library, Ensembl 13, GeneCards, GeneLoc

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Peking University has set up a website on bioinformatics resources related to SARS research at http://antisars.cbi.pku.edu.cn/.

 

NCBI has added genotype data access capability to dbSNP via new web pages and reports. Genotype data for an individual SNP or a particular population, as well as XML files for all SNP genotypes for human and mouse are available. Further information is at ftp://ftp.ncbi.nih.gov/snp/specs/genotype_resources.txt.

 

World Scientific Publishing has launched the Journal of Bioinformatics and Computational Biology. A free electronic version can be found at http://www.worldscinet.com/ journals/jbcb/jbcb.shtml.

 

The Numerical Algorithms Group (NAG) and AMD have jointly launched the AMD Core Math Library (ACML), a numerical library optimized for AMD processors. ACML will initially incorporate BLAS, LAPACK, and FFT routines. NAG and AMD also launched high-performance math intrinsics (libm) functions for the AMD Opteron and Athlon 64 processors and the NAG f95 Compiler for AMD64 and Linux.

 

Ensembl 13 is available at www.ensembl.org. New data includes the NCBI 30 assembly, gene build, and EST genes for mouse, and cross-references for the Affymetrix MOE430 and RAE230 expression sets for mouse and rat, respectively, as well as the UMC Utrecht expression set for human.

 

The Weizmann Institute has released version 2.27 of GeneCards and version 2.7 of GeneLoc (form- erly UDB) at http://bioinfo.weizmann. ac .il/genecards/news.html. The new GeneCards release contains 47,794 entries, 16,038 of them with symbols approved by the HUGO gene nomenclature committee. GeneLoc, available at http://genecards.weizmann.ac.il/geneloc/, now uses the GeneLoc algorithm, which unifies gene collections, eliminates redundancies, and assigns each gene a meaningful location-based identifier, according to its developers.

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The Scan

UK Pilot Study Suggests Digital Pathway May Expand BRCA Testing in Breast Cancer

A randomized pilot study in the Journal of Medical Genetics points to similar outcomes for breast cancer patients receiving germline BRCA testing through fully digital or partially digital testing pathways.

Survey Sees Genetic Literacy on the Rise, Though Further Education Needed

Survey participants appear to have higher genetic familiarity, knowledge, and skills compared to 2013, though 'room for improvement' remains, an AJHG paper finds.

Study Reveals Molecular, Clinical Features in Colorectal Cancer Cases Involving Multiple Primary Tumors

Researchers compare mismatch repair, microsatellite instability, and tumor mutation burden patterns in synchronous multiple- or single primary colorectal cancers.

FarGen Phase One Sequences Exomes of Nearly 500 From Faroe Islands

The analysis in the European Journal of Human Genetics finds few rare variants and limited geographic structure among Faroese individuals.