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In Print: November's Bioinformatics Papers of Note


Nekrutenko A, Baker D, Harnessing cloud computing with Galaxy Cloud.
Nat Biotechnol. 2011 Nov 8;29(11):972-4.

Müller A, Cornett B,
Computational methods for early predictive safety assessment from biological and chemical data.
Expert Opin Drug Metab Toxicol. 2011 Dec;7(12):1497-511.

Strange A, Bellenguez C,
A robust clustering algorithm for identifying problematic samples in genome-wide association studies.
Bioinformatics. 2011 Nov 3. [Epub ahead of print]

Simonsen M, Ragan MA,
Gene Ontology-driven inference of protein-protein interactions using inducers.
Bioinformatics. 2011 Nov 4. [Epub ahead of print]

Barbosa-Silva A, Donnard ER,
PESCADOR, a web-based tool to assist text-mining of biointeractions extracted from PubMed queries.
BMC Bioinformatics. 2011 Nov 9;12(1):435.

Grosveld FG, van den Hout MC, et al.
NARWHAL, a primary analysis pipeline for NGS data.
Bioinformatics. 2011 Nov 8. [Epub ahead of print]

Seifuddin F, Judy J,
Data mining approaches for genome-wide association of mood disorders.
Psychiatr Genet. 2011 Nov 11. [Epub ahead of print]

Larsen CP, O'Connor DH,
Immunogenetic Management Software: a new tool for visualization and analysis of complex immunogenetic datasets.
Immunogenetics. 2011 Nov 15. [Epub ahead of print]

Beard DA, Qi F, Bazil JN.
A parallel algorithm for reverse engineering of biological networks.
Integr Biol (Camb). 2011 Dec 1;3(12):1215-23.

Lucas JE, Nevins JR,
SIGNATURE: A workbench for gene expression signature analysis.
BMC Bioinformatics. 2011 Nov 14;12(1):443.

Steinbiss S, Kurtz S.
A New Efficient Data Structure for Storage and Retrieval of Multiple Biosequences.
IEEE/ACM Trans Comput Biol Bioinform. 2011 Nov 10. [Epub ahead of print]

Hossain A, Nair A,
TREAT: A Bioinformatics Tool for Variant Annotations and Visualizations in Targeted and Exome Sequencing Data.
Bioinformatics. 2011 Nov 15. [Epub ahead of print]

Gao J, Zhao L,
iAssembler: a package for de novo assembly of Roche-454/Sanger transcriptome sequences.
BMC Bioinformatics. 2011 Nov 23;12(1):453.

Sinha AU, Merrill E,
eXframe: reusable framework for storage, analysis and visualization of genomics experiments.
BMC Bioinformatics. 2011 Nov 21;12(1):452.

Chu D, Zabet N,
A novel and versatile computational tool to model translation.
Bioinformatics. 2011 Nov 22 [Epub ahead of print]

Tsirigos A, Bilal E,
GenomicTools: a computational platform for developing high-throughput analytics in genomics.
Bioinformatics. 2011 Nov 22 [Epub ahead of print]

Adhikari BN, Lévesque CA,
The Comprehensive Phytopathogen Genomics Resource: a web-based resource for data-mining plant pathogen genomes.
Database (Oxford). 2011 Nov 26;2011(0):bar053.

Maccallum B, Clements D,
The Chado Natural Diversity module: a new generic database schema for large-scale phenotyping and genotyping data.
Database (Oxford). 2011 Nov 26;2011(0):bar051.

A novel Bayesian graphical model for genome-wide multi-SNP association mapping.
Genet Epidemiol. 2011 Nov 29. [Epub ahead of print]

Filed under

The Scan

Cell Atlas of Human Lung Development Gives View of Developing Airway

Researchers have generated a cell atlas of human lung development, which they report in Cell.

Study Finds Costs of Genome Sequencing May Limit Utility in Routine Care

Researchers report in the European Journal of Human Genetics that genome sequencing for rare disease diagnoses currently has similar benefits as less expensive exome analysis.

Study Suggests Nursing Mother's Diet Can Impact Offspring's Gut Microbiome

A new Cell Host and Microbe paper finds that mice whose mothers were fed a low-fiber diet during nursing experience lasting microbiota dysbiosis and increased obesity.

Study Links Genetic Risk for ADHD With Alzheimer's Disease

A higher polygenic risk score for attention-deficit/hyperactivity disorder is also linked to cognitive decline and Alzheimer's disease, a new study in Molecular Psychiatry finds.