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In Print: November's Bioinformatics Papers of Note


Nekrutenko A, Baker D, Harnessing cloud computing with Galaxy Cloud.
Nat Biotechnol. 2011 Nov 8;29(11):972-4.

Müller A, Cornett B,
Computational methods for early predictive safety assessment from biological and chemical data.
Expert Opin Drug Metab Toxicol. 2011 Dec;7(12):1497-511.

Strange A, Bellenguez C,
A robust clustering algorithm for identifying problematic samples in genome-wide association studies.
Bioinformatics. 2011 Nov 3. [Epub ahead of print]

Simonsen M, Ragan MA,
Gene Ontology-driven inference of protein-protein interactions using inducers.
Bioinformatics. 2011 Nov 4. [Epub ahead of print]

Barbosa-Silva A, Donnard ER,
PESCADOR, a web-based tool to assist text-mining of biointeractions extracted from PubMed queries.
BMC Bioinformatics. 2011 Nov 9;12(1):435.

Grosveld FG, van den Hout MC, et al.
NARWHAL, a primary analysis pipeline for NGS data.
Bioinformatics. 2011 Nov 8. [Epub ahead of print]

Seifuddin F, Judy J,
Data mining approaches for genome-wide association of mood disorders.
Psychiatr Genet. 2011 Nov 11. [Epub ahead of print]

Larsen CP, O'Connor DH,
Immunogenetic Management Software: a new tool for visualization and analysis of complex immunogenetic datasets.
Immunogenetics. 2011 Nov 15. [Epub ahead of print]

Beard DA, Qi F, Bazil JN.
A parallel algorithm for reverse engineering of biological networks.
Integr Biol (Camb). 2011 Dec 1;3(12):1215-23.

Lucas JE, Nevins JR,
SIGNATURE: A workbench for gene expression signature analysis.
BMC Bioinformatics. 2011 Nov 14;12(1):443.

Steinbiss S, Kurtz S.
A New Efficient Data Structure for Storage and Retrieval of Multiple Biosequences.
IEEE/ACM Trans Comput Biol Bioinform. 2011 Nov 10. [Epub ahead of print]

Hossain A, Nair A,
TREAT: A Bioinformatics Tool for Variant Annotations and Visualizations in Targeted and Exome Sequencing Data.
Bioinformatics. 2011 Nov 15. [Epub ahead of print]

Gao J, Zhao L,
iAssembler: a package for de novo assembly of Roche-454/Sanger transcriptome sequences.
BMC Bioinformatics. 2011 Nov 23;12(1):453.

Sinha AU, Merrill E,
eXframe: reusable framework for storage, analysis and visualization of genomics experiments.
BMC Bioinformatics. 2011 Nov 21;12(1):452.

Chu D, Zabet N,
A novel and versatile computational tool to model translation.
Bioinformatics. 2011 Nov 22 [Epub ahead of print]

Tsirigos A, Bilal E,
GenomicTools: a computational platform for developing high-throughput analytics in genomics.
Bioinformatics. 2011 Nov 22 [Epub ahead of print]

Adhikari BN, Lévesque CA,
The Comprehensive Phytopathogen Genomics Resource: a web-based resource for data-mining plant pathogen genomes.
Database (Oxford). 2011 Nov 26;2011(0):bar053.

Maccallum B, Clements D,
The Chado Natural Diversity module: a new generic database schema for large-scale phenotyping and genotyping data.
Database (Oxford). 2011 Nov 26;2011(0):bar051.

A novel Bayesian graphical model for genome-wide multi-SNP association mapping.
Genet Epidemiol. 2011 Nov 29. [Epub ahead of print]

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