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In Print: May's Bioinformatics Papers of Note

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Ren X, Wang Y, et al.
A unified computational model for revealing and predicting subtle subtypes of cancers.
BMC Bioinformatics 2012 May 1;13(1):70. [Epub ahead of print]


Haustein V, Schumacher U.
A dynamic model for tumour growth and metastasis formation.
J Clin Bioinforma. 2012 May 1;2(1):11. [Epub ahead of print]


Almeida JS, Gruneberg A, et al.
Fractal MapReduce decomposition of sequence alignment.
Algorithms Mol Biol. 2012 May 2;7(1):12. [Epub ahead of print]


Audemard E, Faraut T, Schiex T.
Detecting long tandem duplications in genomic sequences.
BMC Bioinformatics. 2012 May 8;13(1):83. [Epub ahead of print]


Gonnella G, Kurtz S.
Readjoiner: A fast and memory efficient string graph-based sequence assembler.
BMC Bioinformatics. 2012 May 6;13(1):82. [Epub ahead of print]


Calboli FC, Coin LJ, et al.
MultiPhen: Joint model of multiple phenotypes can increase discovery in GWAS.
PLoS One. 2012;7(5):e34861. Epub 2012 May 2.


Leal SM, Liu DJ.
SEQCHIP: A powerful method to integrate sequence and genotype data for the detection of rare variant associations.
Bioinformatics. 2012 May 3. [Epub ahead of print]


Chopra G, Levitt M, Rodrigues JP.
KoBaMIN: a knowledge-based minimization web server for protein structure refinement.
Nucleic Acids Res. 2012 May 7. [Epub ahead of print]


Chen K, Ding L, et al.
BreakFusion: Targeted assembly-based identification of gene fusions in whole transcriptome paired-end sequencing sata.
Bioinformatics. 2012 May 4. [Epub ahead of print]


Chen FC, Hsiung CA, et al.
GEMSiRV: A software platform for GEnome-scale metabolic model simulation, reconstruction and visualization.
Bioinformatics. 2012 May 4. [Epub ahead of print]


Bayjanov JR, Molenaar D, et al.
PhenoLink — a web tool for linking phenotype to -omics data for bacteria: Application to gene-trait matching for Lactobacillus plantarum strains.
BMC Genomics. 2012 May 4;13:170.


Roy A, Yang J, Zhang Y.
COFACTOR: An accurate comparative algorithm for structure-based protein function annotation.
Nucleic Acids Res. 2012 May 8. [Epub ahead of print]


Akiyama Y, Ishida T, et al.
GHOSTM: A GPU-accelerated homology search tool for metagenomics.
PLoS One. 2012;7(5):e36060. Epub 2012 May 4.


Coe BP, Eichler EE, et al.
Copy number variation detection and genotyping from exome sequence data.
Genome Res. 2012 May 14. [Epub ahead of print]


Bertsch A, Bielow C, et al.
TOPPAS: A graphical workflow editor for the analysis of high-throughput proteomics data.
J Proteome Res. 2012 May 24. [Epub ahead of print]


Aksoy BA, Antipin Y, et al.
The cBio Cancer Genomics Portal: An open platform for exploring multidimensional cancer genomics data.
Cancer Discov. 2012 May;2(5):401-4.


Sahli M, Shibuya T.
Arapan-S: A fast and highly accurate whole-genome assembly software for viruses and small genomes.
BMC Res Notes. 2012 May 16;5(1):243. [Epub ahead of print]


Eskin E, Halperin E, et al.
A model-based approach for analysis of spatial structure in genetic data.
Nat Genet. 2012 May 20;44(6):725-31. doi: 10.1038/ng.2285.


Barton MD, Barton HA.
Scaffolder — Software for manual genome scaffolding.
Source Code Biol Med. 2012 May 28;7(1):4. [Epub ahead of print].


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