Skip to main content
Premium Trial:

Request an Annual Quote

In Print: July’s Bioinformatics Papers of Note


Clark NR, Dannenfelser R, Ma'ayan A
Genes2FANs: connecting genes through functional association networks.
BMC Bioinformatics. 2012 Jul 2;13(1):156.

Hennessey J, Lai L, et al.
AraPath: a knowledgebase for pathway analysis in Arabidopsis.
Bioinformatics. 2012 Jul 3 [Epub ahead of print]

Chang D, Keinan A.
Predicting signatures of "synthetic associations" and "natural associations" from empirical patterns of human genetic variation.
PLoS Comput Biol. 2012 Jul;8(7):e1002600.

Abel O, Andersen PM, et al.
ALSoD: A user-friendly online bioinformatics tool for amyotrophic lateral sclerosis genetics.
Hum Mutat. 2012 Jul 2. [Epub ahead of print]

Bertram L, Lill CM
Developing the "next generation" of genetic association databases for complex diseases.
Hum Mutat. 2012 Jul 2. [Epub ahead of print]

Hall A, Hamer KM, et al.
Gemma: A resource for the re-use, sharing and meta-analysis of expression profiling data.
Bioinformatics. 2012 Jul 10. [Epub ahead of print]

Machado M, Magalhaes WC, et al.
A graph-based approach for designing extensible pipelines.
BMC Bioinformatics. 2012 Jul 12;13(1):163.

Huala E, Nepusz T, et al.
GFam: a platform for automatic annotation of gene families.
Nucleic Acids Res. 2012 Jul 11. [Epub ahead of print]

Ertl P, Rohde B.
The Molecule Cloud — compact visualization of large collections of molecules.
J Cheminform. 2012 Jul 6;4(1):12. [Epub ahead of print]

Buckler ES, Gore MA, et al.
GAPIT: Genome Association and Prediction Integrated Tool.
Bioinformatics. 2012 Jul 13 [Epub ahead of print]

Antipov D, Alekseyev MA, et al.
Pathset Graphs: A Novel Approach for Comprehensive Utilization of Paired Reads in Genome Assembly.
J Comput Biol. 2012 Jul 17 [Epub ahead of print]

Bhattacharya D, Dill DL, et al.
Gene expression commons: an open platform for absolute gene expression profiling.
PLoS One. 2012;7(7):e40321.

Asadi NB, Jiang H, et al.
Fast and Accurate Read Alignment for Resequencing.
Bioinformatics. 2012 Jul 18. [Epub ahead of print]

Schmitt-Kopplin P, Suhre K, et al.
MassTRIX Reloaded: Combined Analysis and Visualization of Transcriptome and Metabolome Data.
PLoS One. 2012;7(7):e39860.

Anderson GA, Brown JN, et al.
DanteR: an extensible R-based tool for quantitative analysis of-omics data.
Bioinformatics. 2012 Jul 19. [Epub ahead of print].

Marbach D, Stolovitzky G, et al.
Wisdom of crowds for robust gene network inference.
Nat Methods. 2012 Jul 15. [Epub ahead of print]

Cleland J, Kim R, et al.
SpliceSeq: A Resource for Analysis and Visualization of RNA-Seq Data on Alternative Splicing and Its Functional Impacts.
Bioinformatics. 2012 Jul 20. [Epub ahead of print]

Chen M, Ding D, et al.
atBioNet — an integrated network analysis tool for genomics and biomarker discovery.
BMC Genomics. 2012 Jul 20;13(1):325.

Kamphans T, Krawitz PM.
GeneTalk: an expert exchange platform for assessing rare sequence variants in personal genomes.
Bioinformatics. 2012 Jul 23. [Epub ahead of print]

Jiang Q, Wang S, et al.
A novel hierarchical clustering algorithm for gene sequences.
BMC Bioinformatics. 2012 Jul 23;13(1):174. [Epub ahead of print]

Emmert-Streib F, Dehmer M, et al.
A Bayesian analysis of the chromosome architecture of human disorders by integrating reductionist data.
Sci Rep. 2012;2:513. Epub 2012 Jul 20

Gottlieb A, Oron Y, et al.
INDI: a computational framework for inferring drug interactions and their associated recommendations.
Mol Syst Biol. 2012 Jul 17;8:592.

Filed under

The Scan

Study Reveals Details of SARS-CoV-2 Spread Across Brazil

A genomic analysis in Nature Microbiology explores how SARS-CoV-2 spread into, across, and from Brazil.

New Study Highlights Utility of Mutation Testing in Anaplastic Thyroid Cancer

Genetic mutations in BRAF and RAS are associated with patient outcomes in anaplastic thyroid carcinoma, a new JCO Precision Oncology study reports.

Study Points to Increased Risk of Dangerous Blood Clots in COVID-19 Patients

An analysis in JAMA Internal Medicine finds that even mild COVID-19 increases risk of venous thromboembolism.

Y Chromosome Study Reveals Details on Timing of Human Settlement in Americas

A Y chromosome-based analysis suggests South America may have first been settled more than 18,000 years ago, according to a new PLOS One study.