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In Print: February's Bioinformatics Papers of Note


Asp P, Dynlacht BD, et al.
Picking ChIP-seq peak detectors for analyzing chromatin modification experiments.
Nucleic Acids Res. 2012 Feb 15. [Epub ahead of print]

Mishra B, Narzisi G, Vezzi F.
Feature-by-Feature — Evaluating De Novo Sequence Assembly.
PLoS One. 2012;7(2):e31002.

Elasri MO, George G,et al.
CAPRG: Sequence Assembling Pipeline for Next Generation Sequencing of Non-Model Organisms.
PLoS One. 2012;7(2):e30370.

Bischoff R, Breitling R,et al.
msCompare: a framework for quantitative analysis of label-free LC-MS data for comparative biomarker studies.
Mol Cell Proteomics. 2012 Feb 7. [Epub ahead of print].

Côté RG, Csordas A,et al.
PRIDE Inspector: a tool to visualize and validate MS proteomics data.
Nat Biotechnol. 2012 Feb 8;30(2):135-7.

Fairbrother W, Lim KH
Spliceman — A computational web server that predicts sequence variations in pre-mRNA splicing.
Bioinformatics. 2012 Feb 10. [Epub ahead of print].

Hatzimanikatis V, Overney J, Racle J
A computational framework for the design of optimal protein synthesis.
Biotechnol Bioeng. 2012 Feb 14. [Epub ahead of print].

Arnold P, Erb I,et al.
MotEvo: integrated Bayesian probabilistic methods for inferring regulatory sites and motifs on multiple alignments of DNA sequences.
Bioinformatics. 2012 Feb 15;28(4):487-94.

Chen CK, Doelken SC,et al.
MouseFinder: candidate disease genes from mouse phenotype data.
Hum Mutat. 2012 Feb 13. [Epub ahead of print].

Abreu VA, Azevedo V,et al.
PIPS: Pathogenicity Island Prediction Software.
PLoS One. 2012;7(2):e30848.

Alcaraz N, Baumbach J,et al.
Efficient key pathway mining: combining networks and OMICS data.
Integr Biol (Camb). 2012 Feb 21. [Epub ahead of print].

Childs LH, Lisec J, Walther D.
Matapax: An online high-throughput genome-wide association study pipeline.
Plant Physiol. 2012 Feb 21. [Epub ahead of print].

The Scan

WHO OKs Emergency Use of Sinopharm Vaccine

The World Health Organization has granted emergency approval for Sinopharm's SARS-CoV-2 vaccine, the Guardian reports.

Scientific Integrity Panel to Meet

According to the Associated Press, a new US scientific integrity panel is to meet later this week.

Trying in the Eye

NPR reports that a study of Editas Medicine's CRISPR therapy for Leber congenital amaurosis has begun.

PLOS Papers on Cerebellum Epigenetics, Copy Number Signature Tool, Acute Lung Injury Networks

In PLOS this week: epigenetics analysis of brain tissue, bioinformatics tool to find copy number signatures in cancer, and more.