In Print: Bioinformatics Tool-Related Papers of Note, January 2004 | GenomeWeb

Alexandrov V, Gerstein M. Using 3D hidden Markov models that explicitly represent spatial coordinates to model and compare protein structures. [BMC Bioinformatics 2004, 5:2]: Presents a hidden Markov model formalism that explicitly uses 3D coordinates in its match states, along with methods for aligning query structures against 3D HMMs and scoring the results probabilistically. Availability: http://www.molmovdb.org/geometry/3dHMM.

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