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November's Bioinformatics Papers of Note

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Aloria K, Arizmendi JM, et al.
PAnalyzer: A software tool for protein inference in shotgun proteomics.
BMC Bioinformatics. 2012 Nov 5;13(1):288.


Allen-Soltero SR, Chan JE, et al.
Bioinformatic identification of genes suppressing genome instability.
Proc Natl Acad Sci U S A. Epub 2012 Nov 5.


Butler J, Daley M, et al.
HD-CNV: Hotspot Detector for Copy Number Variants.
Bioinformatics. 2012 Nov 4. [Epub ahead of print]


Hall IM, Layer RM, et al.
Binary Interval Search (BITS): A Scalable Algorithm for Counting Interval Intersections.
Bioinformatics. 2012 Nov 4. [Epub ahead of print]


Bork P, Gonçalves E, et al.
DvD: An R/Cytoscape pipeline for drug repurposing using public repositories of gene expression data.
Bioinformatics. 2012 Nov 4. [Epub ahead of print]


Lin H, Li Y, et al.
A single kernel-based approach to extract drug-drug interactions from biomedical literature.
PLoS One. Epub 2012 Nov 1.


Chen MS, Dai Z, et al.
Improving accuracy for cancer classification with a new algorithm for genes selection.
BMC Bioinformatics. 2012 Nov 13;13(1):298.


Chinnaiyan AM, Iyer MK, Veeneman BA.
Oculus: faster sequence alignment by streaming read compression.
BMC Bioinformatics. 2012 Nov 13;13(1):297.


Jeong SK, Kim H, et al.
PanelComposer: A Web-Based Panel Construction Tool for Multivariate Analysis of Disease Biomarker Candidates.
J Proteome Res. 2012 Nov 16. [Epub ahead of print]


Eng JK, Hoopmann MR, Jahan TA.
Comet: an open source tandem mass spectrometry sequence database search tool.
Proteomics. 2012 Nov 12. [Epub ahead of print]


Berg J, Kolar M, et al.
GraphAlignment: Bayesian pairwise alignment of biological networks.
BMC Syst Biol. 2012 Nov 21;6(1):144.


Heijsman D, Hiltemann SD, et al.
Huvariome: a web server resource of whole genome next-generation sequencing allelic frequencies to aid in pathological candidate gene selection.
J Clin Bioinforma. 2012 Nov 19;2(1):19.


Flassig RJ, Heise S, et al.
An Effective Framework for Reconstructing Gene Regulatory Networks From Genetical Genomics Data.
Bioinformatics 2012 Nov 21. [Epub ahead of print]


Glinskii OV, Glinsky VV, Li F.
Glycobioinformatics: current strategies and tools for data mining in mass spectrometry based glycoproteomics.
Proteomics. 2012 Nov 23. [Epub ahead of print]


Powell DR, Seemann T.
VAGUE: a graphical user interface for the Velvet assembler.
Bioinformatics. 2012 Nov 17. [Epub ahead of print]


Chen Y, M Tannir N, et al.
VirusSeq: Software to identify viruses and their integration sites using next generation sequencing of human cancer tissue.
Bioinformatics. 2012 Nov 17. [Epub ahead of print]


Anthony J, Marth G, et al.
Scribl: An HTML5 Canvas-based graphics library for visualizing genomic data over the web.
Bioinformatics. 2012 Nov 19. [Epub ahead of print]


Amos C, Fang S, et al.
Building a statistical model for predicting cancer genes.
PLoS One. Epub 2012 Nov 15.


Manrique M, Pareja E, et al.
BG7: A New Approach for Bacterial Genome Annotation Designed for Next Generation Sequencing Data.
PLoS One. Epub 2012 Nov 21.


Zhang J, Xu D.
Fast algorithm for population-based protein structural model analysis.
Proteomics. 2012 Nov 26. [Epub ahead of print]


Afgan E, Chapman B.
CloudMan as a platform for tool, data, and analysis distribution.
BMC Bioinformatics. 2012 Nov 27;13(1):315.


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Can't Be Used

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