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Lion Bioscience, DoubleTwist, Paracel, SGI, Edinburgh Biocomputing Systems

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Lion Bioscience has introduced Lion Hosted Services (LHS), a hosted bioinformatics environment that includes software license subscriptions, customizations, and services. LHS currently consists of SRS, bioSCOUT, arrayBASE, and genomeSCOUT, and will soon be extended to include Lion’s other products.

 

DoubleTwist has launched GenomeZone, a new online service. Features include access to an assembled and annotated human genome; an enhanced version of the Double Twist Genomic Viewer; and online access to DoubleTwist Locus Reports, which summarize gene, transcript, protein, and functional information.

 

Paracel, a business unit of Celera Genomics, has launched two new products: GenomeAssembler, a software package for all types of sequence assembly including whole genome shotgun projects; and Transcript-Assembler, software for EST-based transcript assembly. Paracel also released version 2.0 of its TraceTuner base calling technology.

 

SGI has released its high-throughput computing environment for bioinformatics, a resource designed to run efficiently on clusters of the new SGI Origin 300 server. SGI has developed wrappers as part of the HTC environment for Blast, Fasta, ClustalW, and Hmmer.

 

Edinburgh Biocomputing Systems has launched the latest version of MPSRCH 4, which now runs on Intel Pentium/AMD Athlon. MPSRCH 4 runs the Smith-Waterman algorithm up to 10 times faster than a standard implementation on Intel systems, according to EBS.

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The Scan

Nucleotide Base Detected on Near-Earth Asteroid

Among other intriguing compounds, researchers find the nucleotide uracil, a component of RNA sequences, in samples collected from the near-Earth asteroid Ryugu, as they report in Nature Communications.

Clinical Trial Participants, Investigators Point to Importance of Clinical Trial Results Reporting in Canadian Study

Public reporting on clinical trial results is crucial, according to qualitative interviews with clinical trial participants, investigators, and organizers from three provinces appearing in BMJ Open.

Old Order Amish Analysis Highlights Autozygosity, Potential Ties to Blood Measures

Researchers in BMC Genomics see larger and more frequent runs-of-homozygosity in Old Order Amish participants, though only regional autozygosity coincided with two blood-based measures.

Suicidal Ideation-Linked Loci Identified Using Million Veteran Program Data

Researchers in PLOS Genetics identify risk variants within and across ancestry groups with a genome-wide association study involving veterans with or without a history of suicidal ideation.