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Johns Hopkins Genomics Center Using BioDiscovery's Microarray Software

NEW YORK (GenomeWeb News) – BioDiscovery said today that the Johns Hopkins Medical Institute has acquired a multi-seat license to Nexus Expression, a software package designed for microarray gene expression analysis.
 
The software is a platform-independent product that supports Affymetrix, Agilent, Illumina, Roche NimbleGen, and custom arrays, the company said.
 
The Nexus software provides functional annotation and enrichment analysis, gene set analysis, and it allows user input of gene lists for signature analysis, according to Chris Cheadle, director of the Johns Hopkins Lowe Family Genomics Core at Bayview Medical Center.
 
The software allows users to cluster genes and samples to discover expression patterns, compare expression profiles alongside gene annotations, display genes in affected biological processes, perform enrichment analysis, and identify genes that are significantly over-represented in a population, the company said.
 
Financial terms of the agreement were not released.

The Scan

Guidelines for Ancient DNA Work

More than two dozen researchers have developed new ethical guidelines for conducting ancient DNA research, which they present in Nature.

And Cleared

A UK regulator has cleared former UK Prime Minister David Cameron in concerns he should have registered as a consultant-lobbyist for his work with Illumina, according to the Financial Times.

Suit Over Allegations

The Boston Globe reports that David Sabatini, who was placed on leave from MIT after allegations of sexual harassment, is suing his accuser, the Whitehead Institute, and the institute's director.

Nature Papers on Esophageal Cancer, Origin of Modern Horses, Exome Sequencing of UK Biobank Participants

In Nature this week: genetic and environmental influences of esophageal cancer, domestic horse origin traced to Western Eurasian steppes, and more.