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Funding Update: NIH Bioinformatics Grants Awarded Sept. 2 — Oct. 3, 2014, Part 2

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Part 2 of 2

Project Title: Integrating Epigenomic Maps to Predict Regulatory Functions of Genetic Variants
Principal Investigator: Liu, Chunyu
Organization: University of Illinois, Chicago
Project Start Date: Sept. 10, 2014
Project End Date: Aug. 31, 2016
Funding Institute: NIEHS
FY Total Cost: $325,984


Project Title: Clonal Evolution of Structural Variants in the Progression of Metastatic Colorectal [Cancer]
Principal Investigator: Maher, Christopher
Organization: Washington University
Project Start Date: Sept. 8, 2014
Project End Date: Aug. 31, 2016
Funding Institute: NIEHS
FY Total Cost: $171,563


Project Title: Robust Software Tools for Variant Identification and Functional Assessment
Principal Investigator: Marth, Gabor
Organization: University of Utah
Project Start Date: Feb. 1, 2012
Project End Date: Dec. 31, 2015
Funding Institute: NHGRI
FY Total Cost: $76,646


Project Title: Robust Software Tools for Variant Identification and Functional Assessment
Principal Investigator: Marth, Gabor
Organization: University of Utah
Project Start Date: Feb. 1, 2012
Project End Date: Dec. 31, 2015
Funding Institute: NHGRI
FY Total Cost: $673,266


Project Title: Experimental Design Software for Translational Gastrointestinal Microbiome Studies
Principal Investigator: McClure, Alexandra
Organization: William D Shannon Consulting
Project Start Date: Sept. 15, 2014
Project End Date: Aug. 31, 2016
Funding Institute: NIDDK
FY Total Cost: $283,301


Project Title: Development of a Web-based Database and Research Engine for Genetic Discovery
Principal Investigator: Mountain, Joanna
Organization: 23andMe
Project Start Date: Sept. 17, 2012
Project End Date: June 30, 2015
Funding Institute: NHGRI
FY Total Cost: $561,529


Project Title: H3ABioNet: A Sustainable African Bioinformatics Network for H3Africa
Principal Investigator: Mulder, Nicola
Organization: University of Capetown
Project Start Date: Aug. 15, 2012
Project End Date: July 31, 2017
Funding Institute: NHGRI
FY Total Cost: $437,994


Project Title: H3ABioNet: A Sustainable African Bioinformatics Network for H3Africa
Principal Investigator: Mulder, Nicola
Organization: University of Capetown
Project Start Date: Aug. 15, 2012
Project End Date: July 31, 2017
Funding Institute: NHGRI
FY Total Cost: $463,831


Project Title: Computational Tools for Mass Spectrometry-based Interactome Data
Principal Investigator: Nesvizhskii, Alexey
Organization: University of Michigan
Project Start Date: Sept. 10, 2010
Project End Date: Aug. 31, 2018
Funding Institute: NIGMS
FY Total Cost: $312,176


Project Title: Machine Learning Methods to Impute and Annotate Epigenomic Maps
Principal Investigator: Noble, William Stafford
Organization: University of Washington
Project Start Date: Sept. 10, 2014
Project End Date: Aug. 31, 2016
Funding Institute: NIEHS
FY Total Cost: $285,064


Project Title: AutoDock Software Development and Maintenance
Principal Investigator: Olson, Arthur
Organization: Scripps Research Institute
Project Start Date: Jan. 1, 2004
Project End Date: July 31, 2016
Funding Institute: NIGMS
FY Total Cost: $509,643


Project Title: Computational Methods for Modeling Lineage-Specific Gene Regulation
Principal Investigator: Pritchard, Jonathan
Organization: Stanford University
Project Start Date: Sept. 5, 2014
Project End Date: Aug. 31, 2016
Funding Institute: NIEHS
FY Total Cost: $318,763


Project Title: A Community Effort to Translate Protein Data to Knowledge: An Integrated Platform
Principal Investigator: Ping, PeiPei
Organization: University of California, Los Angeles
Project Start Date: Sept. 29, 2014
Project End Date: April 30, 2018
Funding Institute: NIGMS
FY Total Cost: $2,106,052


Project Title: Modeling Epidemic Infectious Diseases Using Sequence Analysis
Principal Investigator: Pond, Sergei Kosakovsky
Organization: University of California, San Diego
Project Start Date: Sept. 5, 2014
Project End Date: May 30, 2019
Funding Institute: NIGMS
FY Total Cost: $640,128


Project Title: Extending Genome-Phenome Analysis
Principal Investigator: Segal, Michael
Organization: SimulConsult
Project Start Date: July 1, 2012
Project End Date: June 30, 2016
Funding Institute: NHGRI
FY Total Cost: $1, 052,394


Project Title: Structural Alignment of RNA Sequences with Applications
Principal Investigator: Sharma, Guarav
Organization: University of Rochester
Project Start Date: Sept. 15, 2011
Project End Date: Aug. 31, 2016
Funding Institute: NIGMS
FY Total Cost: $293,550


Project Title: Fast, Robust Analysis of Large Population Data
Principal Investigator: Shen, Dinggang
Organization: University of North Carolina, Chapel Hill
Project Start Date: Sept. 1, 2011
Project End Date: Aug. 31, 2015
Funding Institute: NIBIB
FY Total Cost: $323,010


Project Title: Data-driven Statistical Learning with Applications to Genomics
Principal Investigator: Simon, Noah
Organization: University of Washington
Project Start Date: Sept. 18, 2014
Project End Date: Aug. 31, 2019
Funding Institute: NIH
FY Total Cost: $361,064


Project Title: New Integrative Pathway Analysis Methods to Predict Biomedical Outcomes
Principal Investigator: Stuart, Joshua Michael
Organization: University of California, Santa Cruz
Project Start Date: Sept. 15, 2014
Project End Date: June 30, 2019
Funding Institute: NIGMS
FY Total Cost: $559,926


Project Title: The Metabolomics Data Center and Workbench (MDCW)
Principal Investigator: Subramaniam, Shankar
Organization: University of California, San Diego
Project Start Date: Sept. 6, 2012
Project End Date: Aug. 31, 2017
Funding Institute: NIDDK
FY Total Cost: $125,000


Project Title: Big Data for Discovery Science
Principal Investigator: Toga, Arthur
Organization: University of Southern California
Project Start Date: Sept. 29, 2014
Project End Date: Sept. 30, 2018
Funding Institute: NIBIB
FY Total Cost: $2,095,250


Project Title: ChemBench: The Integrated Web Portal to Accelerate Cheminformatics and Chemical [Genomics Research]
Principal Investigator: Tropsha, Alexander
Organization: University of North Carolina, Chapel Hill
Project Start Date: Sept. 1, 2012
Project End Date: Aug. 31, 2016
Funding Institute: NIGMS
FY Total Cost: $288,800


Project Title: Statistical Analysis Methods for Validating Risk Prediction Models
Principal Investigator: Uno, Hajime
Organization: Dana-Farber Cancer Institute
Project Start Date: Sept. 5, 2014
Project End Date: Aug. 31, 2016
Funding Institute: NCI
FY Total Cost: $255,765


Project Title: Algorithms to Identify Non-coding Mutational Burden and Disease-relevant Pathways
Principal Investigator: Voight, Benjamin Franklin
Organization: University of Pennsylvania
Project Start Date: Sept. 6, 2014
Project End Date: June 30, 2018
Funding Institute: NIDDK
FY Total Cost: $441,388


Project Title: Development of an Integrated Mathematical Model for Comparative Characterization of Complex Molecule
Principal Investigator: Volkin, David
Organization: University of Kansas
Project Start Date: Sept. 10, 2014
Project End Date: Aug. 31, 2017
Funding Institute: FDA
FY Total Cost: N/A


Project Title: Statistical Methods for Genomic Analysis of Heterogeneous Tumors
Principal Investigator: Wang, Wengyi
Organization: University of Texas MD Anderson Cancer Center
Project Start Date: Sept. 24, 2014
Project End Date: Aug. 31, 2019
Funding Institute: NCI
FY Total Cost: $409,530


Project Title: Privacy Preserving Technologies for Human Genome Data Analysis and Dissemination
Principal Investigator: Wang, Xiaofeng
Organization: Indiana University Bloomington
Project Start Date: Sept. 23, 2013
Project End Date: June 30, 2016
Funding Institute: NHGRI
FY Total Cost: $294,000


Project Title: Integration of Multiscale Genomic Data for Comprehensive Analysis of Complex Disease
Principal Investigator: Wang, Yu-Ping
Organization: Tulane University
Project Start Date: Sept. 17, 2014
Project End Date: Aug. 31, 2019
Funding Institute: NIGMS
FY Total Cost: $311,844


Project Title: Integration Pipeline for Analysis & Translational Application of TCGA Data
Principal Investigator: Weinstein, John
Organization: University of Texas MD Anderson Cancer Center
Project Start Date: Sept. 29, 2009
Project End Date: July 31, 2015
Funding Institute: NCI
FY Total Cost: $700,000


Project Title: Statistical and Computational Analysis in Whole Genome Sequencing Studies
Principal Investigator: Wong, Wing
Organization: Stanford University
Project Start Date: Sept. 22, 2014
Project End Date: June 30, 2017
Funding Institute: NHGRI
FY Total Cost: $300,000


Project Title: Statistical Models and Analysis of Complex Genomic Variation in Clonal Mixtures
Principal Investigator: Zhang, Nancy
Organization: University of Pennsylvania
Project Start Date: July 6, 2011
Project End Date: June 30, 2017
Funding Institute: NHGRI
FY Total Cost: $258,774


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