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Funding Update: NIH Bioinformatics Grants Awarded May 3 — June 6, 2013, Part 2

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Part 2 of 2

Project Title: Design and Analysis of Sequencing Studies for Gene Mapping in Families
Principal Investigator: Li, Bingshan
Organization: Vanderbilt University Medical Center
Project Start Date: June 1, 2013
Project End Date: May 31, 2017
Funding Institute: NHGRI
FY Total Cost: $380,000


Project Title: The Comparative Toxicogenomics Database
Principal Investigator: Mattingly, Carolyn
Organization: Mount Desert Island Biological Lab.
Project Start Date: Aug. 1, 2005
Project End Date: Apr. 30, 2016
Funding Institute: NIEHS
FY Total Cost: $258,452


Project Title: Copasi Software for Modeling and Simulation of Biochemical Networks
Principal Investigator: Mendes, Pedro
Organization: Virginia Polytechnic Institute and State University
Project Start Date: Sept. 1, 2007
Project End Date: May 31, 2016
Funding Institute: NIGMS
FY Total Cost: $322,159


Project Title: Bayesian Modeling and Data Integration in Infectious Disease Phylodynamics
Principal Investigator: Minin, Vladimir
Organization: University of Washington
Project Start Date: May 22, 2013
Project End Date: Apr. 30, 2018
Funding Institute: NIAID
FY Total Cost: $351,488


Project Title: Machine Learning Analysis of Tandem Mass Spectra
Principal Investigator: Noble, William
Organization: University of Washington
Project Start Date: Mar. 1, 2007
Project End Date: May 31, 2015
Funding Institute: NIGMS
FY Total Cost: $561,649


Project Title: The Implementation of a Pharmacogenomics-based Algorithm for Warfarin Dosing
Principal Investigator: Perera, Minoli
Organization: University of Chicago
Project Start Date: July 15, 2009
Project End Date: Apr. 30, 2014
Funding Institute: NHLBI
FY Total Cost: $120,339


Project Title: WikiPathways Project: At the Intersection of Big Data and Researcher Knowledge
Principal Investigator: Pico, Alexander
Organization: J. David Gladstone Institutes
Project Start Date: Sept. 1, 2012
Project End Date: May 31, 2017
Funding Institute: NIGMS
FY Total Cost: $352,105


Project Title: Computational and Functional Approaches to Validating Cancer Genome Targets
Principal Investigator: Powers, Scott
Organization: Cold Spring Harbor Laboratory
Project Start Date: May 1, 2012
Project End Date: Apr. 30, 2017
Funding Institute: NCI
FY Total Cost: $326,815


Project Title: New Algorithms and Tools for Large-scale Genomic Analyses
Principal Investigator: Quinlan, Aaron
Organization: University of Virginia
Project Start Date: Apr. 19, 2012
Project End Date: May 31, 2016
Funding Institute: NHGRI
FY Total Cost: $367,929


Project Title: Computational and Statistical Models for Human Genetics
Principal Investigator: Rocha Abecasis, Goncalo
Organization: University of Michigan
Project Start Date: July 18, 2012
Project End Date: Apr. 30, 2017
Funding Institute: NHGRI
FY Total Cost: $591,256


Project Title: Whole Transcriptome Analysis for Neurobiology
Principal Investigator: Ryutov, Alex
Organization: Epicenter Software
Project Start Date: July 1, 2008
Project End Date: May 31, 2014
Funding Institute: NINDS
FY Total Cost: $433,513


Project Title: Alignment Software for Second-generation Sequencing
Principal Investigator: Salzberg, Steven
Organization: Johns Hopkins University
Project Start Date: July 6, 2011
Project End Date: Apr. 30, 2014
Funding Institute: NHGRI
FY Total Cost: $660,194


Project Title: Statistical Methods for Family-based Association Studies
Principal Investigator: Sha, Qiuying
Organization: Michigan Technological University
Project Start Date: May 17, 2012
Project End Date: Mar. 31, 2014
Funding Institute: NHGRI
FY Total Cost: $78,000


Project Title: Reactome: An Open Knowledgebase of Human Pathways
Principal Investigator: Stein, Lincoln
Organization: Ontario Institute for Cancer Research
Project Start Date: July 1, 2005
Project End Date: Feb. 28, 2017
Funding Institute: NHGRI
FY Total Cost: $1,216,983


Project Title: A Computational Metabolomics Tool (CoMet) for Cancer Metabolism
Principal Investigator: Styczynski, Mark
Organization: Georgia Institute of Technology
Project Start Date: June 1, 2012
Project End Date: May 30, 2014
Funding Institute: NCI
FY Total Cost: $39,024


Project Title: BigData: Mid-scale DCM: DA: ESCE: Discovering Molecular Processes
Principal Investigator: Stuart, Joshua
Organization: University of California, Santa Cruz
Project Start Date: June 1, 2013
Project End Date: May 31, 2018
Funding Institute: NCI
FY Total Cost: $667,182


Project Title: The Gene Wiki: Community Intelligence Applied to Gene Annotation
Principal Investigator: Su, Andrew
Organization: Scripps Research Institute
Project Start Date: Aug. 1, 2010
Project End Date: May 31, 2014
Funding Institute: NIGMS
FY Total Cost: $322,267


Project Title: New Methods and Enhanced Software for Predicting Functional SNPs
Principal Investigator: Sunyaev, Shamil
Organization: Brigham and Women's Hospital
Project Start Date: Apr. 1, 2006
Project End Date: Apr. 30, 2016
Funding Institute: NIGMS
FY Total Cost: $353,118


Project Title: Semi-parametric Methods for Gene-environment Interaction
Principal Investigator: Tchetgen, Eric
Organization: Harvard University School of Public Health
Project Start Date: July 20, 2012
Project End Date: Apr. 30, 2016
Funding Institute: NIEHS
FY Total Cost: $171,321


Project Title: Mathematical Population Genetics
Principal Investigator: Uyenoyama, Marcy
Organization: Duke University
Project Start Date: July 1, 1986
Project End Date: May 31, 2014
Funding Institute: NIGMS
FY Total Cost: $247,283


Project Title: Computational Genome-wide RNA Profiling Using Next-generation Sequencing
Principal Investigator: Wang, Li-San
Organization: University of Pennsylvania
Project Start Date: Sept. 14, 2012
Project End Date: May 31, 2017
Funding Institute: NIGMS
FY Total Cost: $280,800


Project Title: Analysis of Rare Variants & Population Structure
Principal Investigator: Weir, Bruce
Organization: University of Washington
Project Start Date: Not Listed
Project End Date: Not Listed
Funding Institute: NIGMS
FY Total Cost: $213,649


Project Title: Bayesian Methods for Genome-wide Interacting QTL Mapping
Principal Investigator: Yi, Nengjun
Organization: University of Alabama, Birmingham
Project Start Date: June 1, 2005
Project End Date: May 31, 2014
Funding Institute: NIGMS
FY Total Cost: $291,801


Project Title: Mapping the Genetic Architecture of Complex Disease via RNA-seq and GWAS Data
Principal Investigator: Zhao, Zhongming
Organization: Vanderbilt University Medical Center
Project Start Date: May 1, 2012
Project End Date: Apr. 30, 2015
Funding Institute: NLM
FY Total Cost: $315,458


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Rett Syndrome Mouse Model Study Points to RNA Editing Possibilities

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An association study in JAMA Network Open uncovers risk variants within and beyond the human leukocyte antigen locus.

Transcriptomic, Epigenetic Study Appears to Explain Anti-Viral Effects of TB Vaccine

Researchers report in Science Advances on an interferon signature and long-term shifts in monocyte cell DNA methylation in Bacille Calmette-Guérin-vaccinated infant samples.