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Funding Update: NIH Bioinformatics Grants Awarded May 3 — June 6, 2013

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Part 1 of 2

Project Title: Combining Systems Biology and Structural Biology to Find New Therapeutics
Principal Investigator: Altman, Russ
Organization: Stanford University
Project Start Date: Sept. 1, 2012
Project End Date: May 31, 2016
Funding Institute: NIGMS
FY Total Cost: $339,274


Project Title: A Computational Analysis of Psychiatric Genetics Data: Pathways and Architecture
Principal Investigator: Askland, Kathleen
Organization: Butler Hospital
Project Start Date: June 20, 2009
Project End Date: May 31, 2014
Funding Institute: NIMH
FY Total Cost: $185,220


Project Title: Parallel Software for Fast, Automated Determination of Virus Structures
Principal Investigator: Baker, Timothy
Organization: University of California, San Diego
Project Start Date: June 1, 2010
Project End Date: May 31, 2014
Funding Institute: NIGMS
FY Total Cost: $295,203


Project Title: Statistical Methods and Software for QTL Mapping
Principal Investigator: Broman, Karl
Organization: University of Wisconsin, Madison
Project Start Date: June 1, 2005
Project End Date: May 31, 2014
Funding Institute: NIGMS
FY Total Cost: $265,101


Project Title: Mapping the Drugome: Predictive Network Approaches to Drug Safety Surveillance
Principal Investigator: Cami, Aurel
Organization: Children's Hospital Corporation
Project Start Date: Apr. 1, 2011
Project End Date: Mar. 31, 2016
Funding Institute: NLM
FY Total Cost: $187,020


Project Title: Continued Development of CellProfiler Cell Image Analysis Software
Principal Investigator: Carpenter, Anne
Organization: Broad Institute
Project Start Date: July 1, 2010
Project End Date: May 31, 2014
Funding Institute: NIGMS
FY Total Cost: $474,880


Project Title: Predictive Modeling with Clinical and Genomic Data in COPD
Principal Investigator: Castaldi, Peter
Organization: Brigham and Women's Hospital
Project Start Date: May 1, 2010
Project End Date: Apr. 30, 2015
Funding Institute: NHLBI
FY Total Cost: $128,250


Project Title: SCOP: A Revitalized Foundation for Studies of Protein Structure and Evolution
Principal Investigator: Chandonia, John-Marc
Organization: University of California, Lawrence Berkeley Laboratory
Project Start Date: Dec. 1, 2004
Project End Date: Apr. 30, 2014
Funding Institute: NIGMS
FY Total Cost: $336,203


Project Title: Statistical Methods for the Study of Alternative Splicing Using Deep Sequencing
Principal Investigator: Chen, Liang
Organization: University of Southern California
Project Start Date: Sept. 5, 2011
Project End Date: May 31, 2015
Funding Institute: NIGMS
FY Total Cost: $336,303


Project Title: Bayesian Statistics and Algorithms for Homology Modeling
Principal Investigator: Dunbrack, Roland
Organization: Fox Chase Cancer Center
Project Start Date: May 15, 2008
Project End Date: Mar. 31, 2017
Funding Institute: NIGMS
FY Total Cost: $339,150


Project Title: Extension of the Sequence Ontology
Principal Investigator: Eilbeck, Karen
Organization: University of Utah
Project Start Date: Aug. 15, 2007
Project End Date: Apr. 30, 2014
Funding Institute: NHGRI
FY Total Cost: $279,985


Project Title: Community Development of the Cell-centered Database
Principal Investigator: Ellisman, Mark
Organization: University of California, San Diego
Project Start Date: Sept. 30, 2007
Project End Date: May 31, 2016
Funding Institute: NIGMS
FY Total Cost: $299,195


Project Title: Mouse Genome Database
Principal Investigator: Eppig, Janan
Organization: Jackson Laboratory
Project Start Date: July 1, 1997
Project End Date: Feb. 29, 2016
Funding Institute: NHGRI
FY Total Cost: $4,683,958


Project Title: Resource for Biocomputing, Visualization, and Informatics
Principal Investigator: Ferrin, Thomas
Organization: University of California, San Francisco
Project Start Date: July 15, 1997
Project End Date: May 31, 2017
Funding Institute: NIGMS
FY Total Cost: $1,411,960


Project Title: Cloud-enabled Genomics Resource for Automated Pathogen Diagnostics in the Field
Principal Investigator: Fricke, Florian
Organization: University of Maryland, Baltimore
Project Start Date: June 1, 2012
Project End Date: May 31, 2014
Funding Institute: NIAID
FY Total Cost: $204,880


Project Title: Online Mendelian Inheritance in Man
Principal Investigator: Hamosh, Ada
Organization: Johns Hopkins University
Project Start Date: June 12, 2012
Project End Date: Feb. 28, 2015
Funding Institute: NHGRI
FY Total Cost: $1,962,955


Project Title: Statistical Models for Genome Sequencing and Association
Principal Investigator: Ji, Hanlee
Organization: Stanford University
Project Start Date: July 6, 2011
Project End Date: Apr. 30, 2014
Funding Institute: NHGRI
FY Total Cost: $215,645


Project Title: Computational Tools for Mining Large Amounts of ChIP and Gene Expression Data
Principal Investigator: Ji, Hongkai
Organization: Johns Hopkins University
Project Start Date: July 25, 2012
Project End Date: Apr. 30, 2017
Funding Institute: NHGRI
FY Total Cost: $385,770


Project Title: Statistical and Computational Tools for Next-generation ChIP-seq Applications
Principal Investigator: Ji, Hongkai
Organization: Johns Hopkins University
Project Start Date: Sept. 12, 2012
Project End Date: May 31, 2015
Funding Institute: NHGRI
FY Total Cost: $309,420


Project Title: Repbase Update — A Database of Repetitive Sequences
Principal Investigator: Jurka, Jerzy
Organization: Genetic Information Research Institute
Project Start Date: Sept. 30, 1996
Project End Date: Apr. 30, 2014
Funding Institute: NLM
FY Total Cost: $522,644


Project Title: Development and Support of the Pathway Tools Software
Principal Investigator: Karp, Peter
Organization: SRI International
Project Start Date: Apr. 1, 2005
Project End Date: May 31, 2016
Funding Institute: NIGMS
FY Total Cost: $1,014,111


Project Title: The MetaCyc and BioCyc Pathway/Genome Databases
Principal Investigator: Karp, Peter
Organization: SRI International
Project Start Date: June 19, 2007
Project End Date: May 31, 2015
Funding Institute: NIGMS
FY Total Cost: $1,178,214


Project Title: Novel Web-based Tools for Collaborative Community-driven Genome Feature Annotation
Principal Investigator: Lewis, Suzanne
Organization: University of California, Lawrence Berkeley Lab.
Project Start Date: Aug. 1, 2007
Project End Date: Apr. 30, 2014
Funding Institute: NIGMS
FY Total Cost: $604,264


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