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Funding Update: NIH Bioinformatics Grants Awarded June 6 — July 9, 2013

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Part 1 of 2

Project Title: PharmGKB: From Association to Mechanism
Principal Investigator: Altman, Russ
Organization: Stanford University
Project Start Date: Apr. 1, 2000
Project End Date: June 30, 2015
Funding Institute: NIGMS
FY Total Cost: $3,072,838


Project Title: Integrative Methods for High-dimensional Genomics Data
Principal Investigator: Baladandayuthapani, Veerabhadran
Organization: MD Anderson Cancer Center
Project Start Date: Aug. 23, 2011
Project End Date: June 30, 2015
Funding Institute: NCI
FY Total Cost: $308,179


Project Title: The Protein Structure Initiative Knowledgebase
Principal Investigator: Berman, Helen
Organization: Rutgers The State University of New Jersey
Project Start Date: July 1, 2010
Project End Date: June 30, 2015
Funding Institute: NIGMS
FY Total Cost: $2,500,451


Project Title: Identifying Rare Haplotype-Environment Interactions Using Logistic Bayesian Lasso
Principal Investigator: Biswas, Swati
Organization: University of Texas, Dallas
Project Start Date: July 10, 2012
Project End Date: June 30, 2014
Funding Institute: NCI
FY Total Cost: $82,326


Project Title: SpBase: A Database System for Echinoderm Genome Information
Principal Investigator: Cameron, Robert
Organization: California Institute of Technology
Project Start Date: June 15, 2012
Project End Date: May 31, 2017
Funding Institute: NICHD
FY Total Cost: $525,355


Project Title: Clinical Prioritization of Reported Disease Variants in Asymptomatic Individuals
Principal Investigator: Cassa, Christopher
Organization: Brigham and Women's Hospital
Project Start Date: July 1, 2013
Project End Date:June 30, 2015
Funding Institute: NHGRI
FY Total Cost: $109,080


Project Title: Population Genetic Inferences from Dense Genotype Data
Principal Investigator: Clark, Andrew
Organization: Cornell University
Project Start Date: May 21, 2004
Project End Date:June 30, 2014
Funding Institute: NHGRI
FY Total Cost: $805,945


Project Title: Molecular Dynamics Simulations of Protein Unfolding
Principal Investigator: Daggett, Valerie
Organization: University of Washington
Project Start Date: Aug. 1, 1995
Project End Date:June 30, 2015
Funding Institute: NIGMS
FY Total Cost: $278,968


Project Title: Visant-Predictome: A System for Integration, Mining, Visualization, and Analysis
Principal Investigator: Delsi, Charles
Organization: Boston University
Project Start Date: July 1, 2007
Project End Date:June 30, 2016
Funding Institute: NIGMS
FY Total Cost: $751,232


Project Title: Analysis of Gene Signaling Pathways with Applications in Obesity and Diabetes
Principal Investigator: Draghici, Sorin
Organization: Wayne State University
Project Start Date: July 15, 2010
Project End Date:June 30, 2014
Funding Institute: NIDDK
FY Total Cost: $292,866


Project Title: Integrative Analysis of a GWAS Repository with EMRs from over 40,000 Children
Principal Investigator: Hakonarson, Hakon
Organization: Children's Hospital of Philadephia
Project Start Date: May 15, 2012
Project End Date:Apr. 30, 2015
Funding Institute: NHGRI
FY Total Cost: $771,004


Project Title: Accelerating Curation of GWAS Catalog by Automatic Text Mining
Principal Investigator: Hsu, Chun-Nan
Organization: University of Southern California
Project Start Date: Sept. 24, 2012
Project End Date:June 30, 2015
Funding Institute: NHGRI
FY Total Cost: $247,917


Project Title: Resource for Analysis, Visualization, and Integration of Networks (RAVIN)
Principal Investigator: Ideker, Trey
Organization: University of California, San Diego
Project Start Date: Sept. 13, 2010
Project End Date:June 30, 2015
Funding Institute: NIGMS
FY Total Cost: $1,184,616


Project Title: Statistical Methods for Annotating Repetitive Genomic Regions through ENCODE
Principal Investigator: Keles, Sunduz
Organization: University of Wisconsin, Madison
Project Start Date: Sept. 17, 2012
Project End Date:June 30, 2015
Funding Institute: NHGRI
FY Total Cost: $404,900


Project Title: The UCSC Genome Browser
Principal Investigator: Kent, William
Organization: University of California, Santa Cruz
Project Start Date: July 12, 2001
Project End Date:June 30, 2017
Funding Institute: NHGRI
FY Total Cost: $3,244,128


Project Title: Fast K-mer Counting to Quantify Gene Expression and Improve Genome Assembly
Principal Investigator: Kingsford, Carleton
Organization: Carnegie-Mellon University
Project Start Date: Aug. 1, 2012
Project End Date: Apr. 30, 2015
Funding Institute: NHGRI
FY Total Cost: $240,627


Project Title: Linking Disease-associated Variants to Transcriptional Regulation Using ENCODE
Principal Investigator: Klein, Robert
Organization: Memorial Sloan-Kettering Cancer Center
Project Start Date: Sept. 17, 2012
Project End Date: June 30, 2015
Funding Institute: NHGRI
FY Total Cost: $526,845


Project Title: Comparative Molecular Sequence Analysis
Principal Investigator: Kumar, Sudhir
Organization: Arizona State University, Tempe
Project Start Date: Jan. 1, 2000
Project End Date: June 30, 2014
Funding Institute: NHGRI
FY Total Cost: $253,075


Project Title: Computational Analysis of Gene Expression Pattern Images
Principal Investigator: Kumar, Sudhir
Organization: Arizona State University, Tempe
Project Start Date: Apr. 1, 2002
Project End Date: June 30, 2014
Funding Institute: NHGRI
FY Total Cost: $580,221


Project Title: Scalable Biomedical Pattern Recognition via Deep Learning
Principal Investigator: Lasko, Thomas
Organization: Vanderbilt University Medical Center
Project Start Date: July 1, 2013
Project End Date: June 30, 2015
Funding Institute: NLM
FY Total Cost: $175,500


Project Title: Methods for Genomic Data with Graphical Structures
Principal Investigator: Lee, Hongzhe
Organization: University of Pennsylvania
Project Start Date: July 1, 2007
Project End Date: June 30, 2017
Funding Institute: NCI
FY Total Cost: $281,354


Project Title: Extending BioTapestry, a Tool for Modeling Gene Regulatory Networks
Principal Investigator: Longabaugh, William
Organization: Institute for Systems Biology
Project Start Date: July 20, 2012
Project End Date: June 30, 2016
Funding Institute: NICHD
FY Total Cost: $473,942


Project Title: Novel Methods for Integrative Analysis of Cancer Genomic Data
Principal Investigator: Ma, Shuangge
Organization: Yale University
Project Start Date: Sept. 1, 2010
Project End Date: June 30, 2014
Funding Institute: NCI
FY Total Cost: $303,152

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