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Funding Update: NIH Bioinformatics Grants Awarded June 3 — July 9, 2014: Jul 25, 2014

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Part 3 of 3

Project Title: New Statistical Methods for High Resolution Mapping of Multiple Phenotypes
Principal Investigator: Sabatti, Chiara
Organization: Stanford University
Project Start Date: April 1, 2013
Project End Date: March 31, 2016
Funding Institute: NHGRI
FY Total Cost: $335,019


Project Title: Pathway Commons: A Public Library of Biological Pathways
Principal Investigator: Sander, Chris
Organization: Sloan-Kettering Institute of Cancer Research
Project Start Date: Sept. 22, 2012
Project End Date: June 30, 2015
Funding Institute: NHGRI
FY Total Cost: $980,001


Project Title: HIV ToolBox, an Interactive, Visual, and Customizable HIV Protein Ontology
Principal Investigator: Schiller, Martin
Organization: University of Nevada, Las Vegas
Project Start Date: July 1, 2014
Project End Date: June 30, 2015
Funding Institute: NIAID
FY Total Cost: $331,875


Project Title: Modeling RNA Tertiary Structure Folding by a Hierarchical Framework
Principal Investigator: Schlick, Tamar
Organization: New York University
Project Start Date: Sept. 9, 2011
Project End Date: June 30, 2015
Funding Institute: NIGMS
FY Total Cost: $367,367


Project Title: Computational and Mathematical Modeling of Biomedical Systems
Principal Investigator: Secomb, Timothy
Organization: University of Arizona
Project Start Date: July 1, 2008
Project End Date: June 30, 2019
Funding Institute: NIGMS
FY Total Cost: $225,314


Project Title: Curated Copy Number Variation TCGA Database and Analytical Platform for Use in Ca[ncer]
Principal Investigator: Shams, Soheil
Organization: BioDiscovery
Project Start Date: June 11, 2014
Project End Date: May 31, 2015
Funding Institute: NCI
FY Total Cost: $156,809


Project Title: New Machine Learning Tools for Biomedical Data
Principal Investigator: Shen, Xiaotong
Organization: University of Minnesota
Project Start Date: July 15, 2007
Project End Date: June 30, 2015
Funding Institute: NIGMS
FY Total Cost: $293,329


Project Title: New Solvent Models, Sampling Methods and Maintenance of Amber Software
Principal Investigator: Simmerling, Carlos
Organization: State University of New York, Stonybrook
Project Start Date: Aug. 1, 2013
Project End Date: June 30, 2017
Funding Institute: NIGMS
FY Total Cost: $298,354


Project Title: Quantitative Analysis of Cell Death Pathways in Cancer
Principal Investigator: Sorger, Peter
Organization: Harvard University
Project Start Date: Not Listed
Project End Date: Not Listed
Funding Institute: NCI
FY Total Cost: $296,440


Project Title: Machine Vision Analysis of C. Elegans Phenotypic Patterns
Principal Investigator: Sternberg, Paul
Organization: California Institute of Technology
Project Start Date: July 15, 2005
Project End Date: May 31, 2015
Funding Institute: NIDA
FY Total Cost: $384,083


Project Title: Statistical Methods for High-throughput Gene Expression Profiling
Principal Investigator: Storey, John
Organization: Princeton University
Project Start Date: July 1, 2003
Project End Date: June 30, 2016
Funding Institute: NHGRI
FY Total Cost: $372,598


Project Title: Improving Polygenic Prediction Using Next-generation Data Sets
Principal Investigator: Sunyaev, Shamil
Organization: Brigham and Women's Hospital
Project Start Date: June 15, 2014
Project End Date: Feb. 28, 2018
Funding Institute: NIGMS
FY Total Cost: $543,271


Project Title: A Toolkit for Identifying Causal Variants in Transcriptional Enhancers
Principal Investigator: Tan, Kai
Organization: University of Iowa
Project Start Date: July 1, 2014
Project End Date: June 30, 2018
Funding Institute: NIGMS
FY Total Cost: $286,900


Project Title: Computational Methods for Unraveling Combinatorial Gene Regulation
Principal Investigator: Tan, Kai
Organization: University of Iowa
Project Start Date: June 15, 2014
Project End Date: March 31, 2018
Funding Institute: NIGMS
FY Total Cost: $298,057


Project Title: Method for Pathway Modeling with Application to Folate
Principal Investigator: Thomas, Duncan
Organization: University of Southern California
Project Start Date: Aug. 16, 2010
Project End Date: March 31, 2015
Funding Institute: NIEHS
FY Total Cost: $533,950


Project Title: BioGrid: An Open Integrated Resource for Biological Interaction Data
Principal Investigator: Tyres, Michael
Organization: Mount Sinai Hospital
Project Start Date: May 15, 2007
Project End Date: Jan. 31, 2016
Funding Institute: NIH
FY Total Cost: $877,795


Project Title: Power Analysis Tools for Biomarker Discovery with Heterogenous Diseases
Principal Investigator: Wallstrom, Garrick
Organization: Arizona State University, Tempe Campus
Project Start Date: July 8, 2014
Project End Date: June 30, 2016
Funding Institute: NCI
FY Total Cost: $160,497


Project Title: Efficient Methods for Genotype-specific Distributions with Unobserved Genotypes
Principal Investigator: Wang, Yuanjia
Organization: Columbia University
Project Start Date: July 15, 2011
Project End Date: June 30, 2015
Funding Institute: NINDS
FY Total Cost: $263,401


Project Title: Bioinformatics Inquiry Through Sequencing (BioSeq)
Principal Investigator: Walt, David
Organization: Tufts University
Project Start Date: June 1, 2012
Project End Date: May 31, 2017
Funding Institute: NIH
FY Total Cost: $255,005


Project Title: Genetic Susceptibility and Risk Model for Pancreatic Cancer
Principal Investigator: Wei, Peng
Organization: University of Texas, Houston
Project Start Date: Sept. 17, 2013
Project End Date: May 31, 2017
Funding Institute: NCI
FY Total Cost: $254,296


Project Title: Quantile Analysis on Human Complex Traits in GWAS and Sequencing Studies
Principal Investigator: Wei, Ying
Organization: Columbia University
Project Start Date: Aug. 8, 2013
Project End Date: June 30, 2015
Funding Institute: NHGRI
FY Total Cost: $80,000


Project Title: PRO: A Protein Ontology in OBO Foundry for Integration of Biomedical Knowledge
Principal Investigator: Wu, Cathy
Organization: University of Delaware
Project Start Date: May 1, 2007
Project End Date: June 30, 2015
Funding Institute: NIGMS
FY Total Cost: $874,165


Project Title: Analysis of Causal Genetic Variants in Pre-mRNA Processing Using ENCODE Data
Principal Investigator: Xiao, Xinshu
Organization: University of California, Los Angeles
Project Start Date: Sept. 17, 2012
Project End Date: June 30, 2015
Funding Institute: NHGRI
FY Total Cost: $294,104


Project Title: Machine Learning Methods to Increase Genomic Accessibility by Next-gen Sequencing
Principal Investigator: Xie, Xiaohui
Organization: University of California, Irvine
Project Start Date: Aug. 1, 2012
Project End Date: June 30, 2015
Funding Institute: NHGRI
FY Total Cost: $221,252


Project Title: Time/Space-varying Networks of Molecular Interactions …
Principal Investigator: Xing, Poe
Organization: Carnegie Mellon University
Project Start Date: July 1, 2010
Project End Date: June 30, 2015
Funding Institute: NIGMS
FY Total Cost: $434,355


Project Title: I-TASSER-based Atomic-level Protein Structure Prediction
Principal Investigator: Zhang, Yang
Organization: University of Michigan
Project Start Date: April 1, 2008
Project End Date: June 30, 2017
Funding Institute: NIGMS
FY Total Cost: $286,210


Project Title: New Bayesian Algorithms for Genome-wide Association Mapping
Principal Investigator: Zhang, Yu
Organization: Pennsylvania State University
Project Start Date: Aug.15, 2008
Project End Date: June 30, 2015
Funding Institute: NHGRI
FY Total Cost: $183,472


Project Title: XenBase: A Xenopus Model Organism Database
Principal Investigator: Zorn, Aaron
Organization: Cincinnati Children's Hospital
Project Start Date: June 1, 2010
Project End Date: May 31, 2015
Funding Institute: NICHD
FY Total Cost: $859,632

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