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Funding Update: NIH Bioinformatics Grants Awarded Dec. 10, 2013 — Jan. 14, 2014

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Project Title: Continued Development of Protein Dynamics Software ProDy
Principal Investigator: Bahar, Ivet
Organization: University of Pittsburgh
Project Start Date: March 26, 2012
Project End Date: Dec. 31, 2015
Funding Institute: NIGMS
FY Total Cost: $260,846


Project Title: Bioinformatics
Principal Investigator: Barry, William
Organization: Duke University
Project Start Date: Not Listed
Project End Date: Not Listed
Funding Institute: NCI
FY Total Cost: $205,736


Project Title: Core C Molecular and Bioinformatics
Principal Investigator: Belknap, John
Organization: Oregon Health & Science University
Project Start Date: Not Listed
Project End Date: Not Listed
Funding Institute: NIAAA
FY Total Cost: $238,726


Project Title: Algorithmic Assignment of Probably Function to Proteins of Previously Unknown Fun[ction]
Principal Investigator: Bernstein, Herbert
Organization: Dowling College
Project Start Date: Aug. 1, 2006
Project End Date: Aug. 31, 2014
Funding Institute: NIGMS
FY Total Cost: $26,877


Project Title: Neuroinformatics for Prospective Data Management and Sharing
Principal Investigator: Bockholt, Henry
Organization: Advanced Biomedical Informatics Group
Project Start Date: Feb. 1, 2013
Project End Date: Dec. 31, 2014
Funding Institute: NIMH
FY Total Cost: $205,228


Project Title: Design and Analysis of Human Gene Mapping Studies
Principal Investigator: Boehnke, Michael
Organization: University of Michigan
Project Start Date: Sept. 28, 1988
Project End Date: Dec. 31, 2015
Funding Institute: NHGRI
FY Total Cost: $366,645


Project Title: Chemical Biology Design for Malaria
Principal Investigator: Cardozo, Timothy
Organization: New York University School of Medicine
Project Start Date: Sept. 30, 2008
Project End Date: Dec. 31, 2015
Funding Institute: NIH
FY Total Cost: $508,500


Project Title: Flexible Statistical Methods for Biomedical Data
Principal Investigator: Davidian, Marie
Organization: North Carolina State University, Raleigh
Project Start Date: May 1, 2000
Project End Date: Dec. 31, 2015
Funding Institute: NCI
FY Total Cost: $196,396


Project Title: Visualization of (Epi)Genomic Data for Discovery of Disease-associated Variants
Principal Investigator: Gehlenborg, Nils
Organization: Harvard University
Project Start Date: Jan. 1, 2014
Project End Date: Dec. 31, 2015
Funding Institute: NHGRI
FY Total Cost: $88,642


Project Title: Computer-aided Design of Anti-HIV Drugs
Principal Investigator: Jorgensen, William
Organization: Yale University
Project Start Date: Jan. 1, 1999
Project End Date: Dec. 31, 2017
Funding Institute: NIAID
FY Total Cost: $374,625


Project Title: Statistical Analysis Methods and Software for ChIP-seq
Principal Investigator: Keles, Sunduz
Organization: University of Wisconsin, Madison
Project Start Date: July 1, 2005
Project End Date: Dec. 31, 2015
Funding Institute: NHGRI
FY Total Cost: $275,047


Project Title: Biostatistics and Bioinformatics Core
Principal Investigator: Kim, Kyoungmi
Organization: University of California, Davis
Project Start Date: Not Listed
Project End Date: Not Listed
Funding Institute: NIA
FY Total Cost: $50,123


Project Title: Computational and Experimental Modeling of Epigenetic DNA Methylation
Principal Investigator: Li, Wei
Organization: Baylor College of Medicine
Project Start Date: Dec. 19, 2013
Project End Date: Nov. 30, 2018
Funding Institute: NHGRI
FY Total Cost: $352,125


Project Title: Flexible Statistical Machine Learning Techniques for Cancer-related Data
Principal Investigator: Liu, Yufeng
Organization: University of North Carolina, Chapel Hill
Project Start Date: Feb. 1, 2010
Project End Date: Dec. 31, 2014
Funding Institute: NCI
FY Total Cost: $263,142


Project Title: Development of Integrated Analysis Methods and Applications to TCGA Data
Principal Investigator: Ma, Shuangge
Organization: Yale University
Project Start Date: Jan. 1, 2014
Project End Date: Dec. 31, 2015
Funding Institute: NCI
FY Total Cost: $83,250


Project Title: Robust Software Tools for Variant Identification and Functional Assessment
Principal Investigator: Marth, Gabor
Organization: Boston College
Project Start Date: Feb. 1, 2012
Project End Date: Dec. 31, 2015
Funding Institute: NHGRI
FY Total Cost: $865,480


Project Title: Accurate Analysis of Genome Structural Variation Using Large-scale Sequence Data
Principal Investigator: McCarroll, Steven
Organization: Harvard University
Project Start Date: Feb. 1, 2012
Project End Date: Dec. 31, 2015
Funding Institute: NHGRI
FY Total Cost: $375,161


Project Title: Supporting Integrative Genomic Analysis Users with GenePattern
Principal Investigator: Mesirov, Jill
Organization: Broad Institute
Project Start Date: June 1, 2005
Project End Date: Dec. 31, 2014
Funding Institute: NIGMS
FY Total Cost: $520,795


Project Title: Protege: An Ontology-development Platform for Biomedical Scientists
Principal Investigator: Musen, Mark
Organization: Stanford University
Project Start Date: Jan. 1, 2013
Project End Date: Dec. 31, 2016
Funding Institute: NIGMS
FY Total Cost: $480,199


Project Title: Haplotype-based Analysis Methods for Population Genomics
Principal Investigator: Novembre, John
Organization: University of Chicago
Project Start Date: Jan. 1, 2013
Project End Date: Dec. 31, 2017
Funding Institute: NHGRI
FY Total Cost: $284,400


Project Title: Powerful Inference and Prediction for Genetic Association
Principal Investigator: Pan, Wei
Organization: University of Minnesota
Project Start Date: March 10, 2011
Project End Date: Dec. 31, 2014
Funding Institute: NHLBI
FY Total Cost: $321,719


Project Title: Biostatistics and Computational Biology
Principal Investigator: Parmigiani, Giovanni
Organization: Dana-Farber Cancer Institute
Project Start Date: Not Listed
Project End Date: Not Listed
Funding Institute: NCI
FY Total Cost: $82,029


Project Title: Bioinformatics Core Facility
Principal Investigator: Perou, Charles
Organization: University of North Carolina, Chapel Hill
Project Start Date: Not Listed
Project End Date: Not Listed
Funding Institute: NCI
FY Total Cost: $255,335


Project Title: Computational Approaches for Structural Variation Studies in Genomes
Principal Investigator: Raphael, Benjamin
Organization: Brown University
Project Start Date: Jan 1, 2011
Project End Date: Dec. 31, 2015
Funding Institute: NHGRI
FY Total Cost: $441,407


Project Title: Exact Statistical Tools for Genetic Association Studies
Principal Investigator: Senchaudhuri, Pralay
Organization: Cytel
Project Start Date: Jan 1, 2010
Project End Date: Dec. 31, 2014
Funding Institute: NHGRI
FY Total Cost: $464,137


Project Title: A Publicly-accessible Cryptococcus Genome Database: Annotation of the Cryptococcus
Principal Investigator: Stajich, Jason
Organization: University of California, Riverside
Project Start Date: Jan 1, 2013
Project End Date: Dec. 31, 2014
Funding Institute: NIAID
FY Total Cost: $77,910


Project Title: Integration and Visualization of Diverse Biological Data
Principal Investigator: Troyanskaya, Olga
Organization: Princeton University
Project Start Date: July 1, 2004
Project End Date: Dec. 31, 2014
Funding Institute: NIGMS
FY Total Cost: $352,171


Project Title: Nonparametric Methods for Clinical Predictive Model in Pharmacogenomics Research
Principal Investigator: Xie, Jun
Organization: Purdue University, West Lafayette
Project Start Date: Jan. 6, 2014
Project End Date: Dec. 31, 2015
Funding Institute: NIGMS
FY Total Cost: $186,717


Project Title: Toward a Systematic Understanding of Targeting Mechanisms for Epigenetic Factors
Principal Investigator: Yuan, Guo-Cheng
Organization: Dana-Farber Cancer Institute
Project Start Date: Feb. 18, 2011
Project End Date: Nov. 30, 2014
Funding Institute: NHGRI
FY Total Cost: $391,388


Project Title: Integrative Analysis of Public RNA-seq Repositories
Principal Investigator: Zhou, Xianghong
Organization: University of Southern California
Project Start Date: April 1, 2013
Project End Date: Dec. 31, 2016
Funding Institute: NIGMS
FY Total Cost: $277,987


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