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Funding Update: NIH Bioinformatics Grants Awarded Aug. 20 — Sept. 26, 2013: Oct 11, 2013

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Part 3 of 3

Project Title: Finding Novel Reagents by Bioinformatics and Biochemistry
Principal Investigator: Roberts, Richard
Organization: New England Biolabs
Project Start Date: March 5, 2012
Project End Date: Sept. 9, 2014
Funding Institute: NIGMS
FY Total Cost: $437,446


Project Title: Vanderbilt Genome Electronic Records Project
Principal Investigator: Roden, Dan
Organization: Vanderbilt University Medical Center
Project Start Date: Aug. 15, 2011
Project End Date: July 31, 2015
Funding Institute: NHGRI
FY Total Cost: $198,732


Project Title: Vanderbilt Genome Electronic Records Project
Principal Investigator: Roden, Dan
Organization: Vanderbilt University Medical Center
Project Start Date: Aug. 15, 2011
Project End Date: July 31, 2015
Funding Institute: NHGRI
FY Total Cost: $1,016,001


Project Title: Computational Gene Modeling and Genome Sequence Assembly
Principal Investigator: Salzberg, Steven
Organization: Johns Hopkins University
Project Start Date: Sept. 1, 1999
Project End Date: Aug. 31, 2014
Funding Institute: NHGRI
FY Total Cost: $575,512


Project Title: LINCS Information Framework (LIFE) to Integrate and Analyze Diverse Dataset
Principal Investigator: Schurer, Stephan
Organization: University of Miami School of Medicine
Project Start Date: Sept. 24, 2011
Project End Date: June 30, 2014
Funding Institute: NHLBI
FY Total Cost: $325,788


Project Title: Computation and Functional Significance of Multi-phenotype Genetic Interaction
Principal Investigator: Segre, Daniel
Organization: Boston University
Project Start Date: Sept. 1, 2010
Project End Date: Aug. 31, 2015
Funding Institute: NIGMS
FY Total Cost: $469,750


Project Title: Methods for Generalized Ontology Terms Enrichment Analysis
Principal Investigator: Shah, Nigam
Organization: Stanford University
Project Start Date: Sept. 1, 2013
Project End Date: Aug. 31, 2017
Funding Institute: NLM
FY Total Cost: $477,224


Project Title: Structural Alignment of RNA Sequences with Applications
Principal Investigator: Sharma, Gaurav
Organization: University of Rochester
Project Start Date: Sept. 15, 2011
Project End Date: Aug. 31, 2016
Funding Institute: NIGMS
FY Total Cost: $283,276


Project Title: Computer Simulation Theory of Globular Protein Dynamics
Principal Investigator: Skolnick, Jeffrey
Organization: Georgia Institute of Technology
Project Start Date: Dec. 1, 1986
Project End Date: Aug. 31, 2015
Funding Institute: NIGMS
FY Total Cost: $283,585


Project Title: Computational Methods for Deep Sequencing Based RBP Binding Motif Characterization
Principal Investigator: Smith, Andrew
Organization: University of Southern California
Project Start Date: Sept. 13, 2011
Project End Date: June 30, 2014
Funding Institute: NHGRI
FY Total Cost: $365,441


Project Title: Genomics GPUs and Next Generation Computational Statistics
Principal Investigator: Sobel, Eric
Organization: University of California, Los Angeles
Project Start Date: Aug. 26, 2011
Project End Date: June 30, 2015
Funding Institute: NHGRI
FY Total Cost: $341,953


Project Title: Mathematical Models and Statistical Methods for Genome Analysis
Principal Investigator: Song, Yun
Organization: University of California, Berkeley
Project Start Date: Sept. 1, 2010
Project End Date: Aug. 31, 2015
Funding Institute: NIGMS
FY Total Cost: $190,481


Project Title: Genome Analysis Data Accuracy, Haplotyping, and Mapping
Principal Investigator: Stephens, Matthew
Organization: University of Chicago
Project Start Date: Sept. 20, 2002
Project End Date: June 30, 2017
Funding Institute: NHGRI
FY Total Cost: $457,954


Project Title: WormBase: A Core Data Resource for C. Elegans and Other Nematodes
Principal Investigator: Sternberg, Paul
Organization: California Institute of Technology
Project Start Date: July 20, 2000
Project End Date: July 31, 2018
Funding Institute: NHGRI
FY Total Cost: $3,106,203


Project Title: Statistical Methods for High-throughput Gene Expression Profiling
Principal Investigator: Storey, John
Organization: Princeton University
Project Start Date: July 1, 2003
Project End Date: June 30, 2016
Funding Institute: NHGRI
FY Total Cost: $377,856


Project Title: The Metabolomics Data Center and Workbench (MDCW)
Principal Investigator: Subramaniam, Shankar
Organization: University of California
Project Start Date: Sept. 6, 2012
Project End Date: Aug. 31, 2017
Funding Institute: NIDDK
FY Total Cost: $935,239


Project Title: Evolutionary Inferences from Protein-coding Genes
Principal Investigator: Thorne, Jeffrey
Organization: North Carolina State University, Raleigh
Project Start Date: Aug. 1, 2005
Project End Date: July 31, 2014
Funding Institute: NIGMS
FY Total Cost: $253,364


Project Title: ChemBench: The Integrated Web Portal to Accelerate Cheminformatics and Chemical Genomics Research
Principal Investigator: Tropsha, Alexander
Organization: University of North Carolina, Chapel Hill
Project Start Date: Sept. 1, 2012
Project End Date: Aug. 31, 2016
Funding Institute: NIGMS
FY Total Cost: $278,692


Project Title: Modeling Human Phosphorylation Networks through Kinome-wide Profiling
Principal Investigator: Turk, Benjamin
Organization: Yale University
Project Start Date: Sept. 10, 2013
Project End Date: May 31, 2018
Funding Institute: NIGMS
FY Total Cost: $499,255


Project Title: Stochastic Models of Cell Cycle Regulation in Eukaryotes
Principal Investigator: Tyson, John
Organization: Virginia Polytechnic Institute
Project Start Date: June 6, 2006
Project End Date: Aug. 31, 2014
Funding Institute: NIGMS
FY Total Cost: $466,851


Project Title: Statistical Modeling of Complex Traits in Genetic Reference Super-populations
Principal Investigator: Valdar, William
Organization: University of North Carolina, Chapel Hill
Project Start Date: Sept. 30, 2012
Project End Date: Aug. 31, 2017
Funding Institute: NIGMS
FY Total Cost: $232,648


Project Title: Privacy Preserving Technologies for Human Genome Data Analysis and Dissemination
Principal Investigator: Wang, Xiaofeng
Organization: Indiana University Bloomington
Project Start Date: Sept. 23, 2013
Project End Date: June 30, 2016
Funding Institute: NHGRI
FY Total Cost: $300,000


Project Title: EDAC: ENCODE Data Analysis Center
Principal Investigator: Weng, Zhiping
Organization: University of Massachusetts
Project Start Date: Sept. 21, 2012
Project End Date: July 31, 2016
Funding Institute: NHGRI
FY Total Cost: $115, 680


Project Title: EDAC: ENCODE Data Analysis Center
Principal Investigator: Weng, Zhiping
Organization: University of Massachusetts
Project Start Date: Sept. 21, 2012
Project End Date: July 31, 2016
Funding Institute: NHGRI
FY Total Cost: $1,871,839


Project Title: Integrative Analysis to Identify Therapeutic Targets for Lung Cancer
Principal Investigator: Xiao, Guanghua
Organization: University of Texas, Southwestern Medical Center
Project Start Date: Sept. 26, 2013
Project End Date: Aug. 31, 2018
Funding Institute: NCI
FY Total Cost: $329,925


Project Title: ITNETZ: Integrative and Translational Network-based Cellular Signature Analyzer
Principal Investigator: Zhou, Xiaobo
Organization: Wake Forest University
Project Start Date: Sept. 24, 2011
Project End Date: June 30, 2014
Funding Institute: NHLBI
FY Total Cost: $290,700


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