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Funding Update: NIH Bioinformatics Grants Awarded Aug. 20 — Sept. 26, 2013: Oct 4, 2013

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Part 2 of 3

Project Title: Rosetta: An Integrated Macromolecular Modeling Suite
Principal Investigator: Kuhlman, Brian
Organization: University of North Carolina, Chapel Hill
Project Start Date: March 1, 2005
Project End Date: April 30, 2017
Funding Institute: NIGMS
FY Total Cost: $581,848


Project Title: Statistical Informatics for Cancer Research
Principal Investigator: Lin, Xihong
Organization: Harvard University School of Public Health
Project Start Date: Sept. 10, 2008
Project End Date: June 30, 2018
Funding Institute: NCI
FY Total Cost: $682,166


Project Title: Developing Informatics Technologies to Model Cancer Gene Regulation
Principal Investigator: Liu, Xiaole
Organization: Dana Farber Cancer Institute
Project Start Date: Sept. 17, 2013
Project End Date: Aug. 31, 2016
Funding Institute: NCI
FY Total Cost: $363,125


Project Title: Inferring Mammalian Transcriptional Regulatory Networks from Epigenomics
Principal Investigator: Liu, Xiaole
Organization: Dana Farber Cancer Institute
Project Start Date: Sept. 10, 2011
Project End Date: Aug. 31, 2015
Funding Institute: NIGMS
FY Total Cost: $329,306


Project Title: Novel Analysis of Gene-gene and Gene-environment Interactions in Alcoholism
Principal Investigator: Lobach, Iryna
Organization: University of California, San Francisco
Project Start Date: Sept. 1, 2013
Project End Date: Aug. 31, 2015
Funding Institute: NIAAA
FY Total Cost: $186,635


Project Title: Supporting RNA Structure: Software for RNA Analysis
Principal Investigator: Matthews, David
Organization: University of Rochester
Project Start Date: Dec. 1, 2005
Project End Date: Aug. 31, 2014
Funding Institute: NIGMS
FY Total Cost: $265,683


Project Title: Statistical Methods for Estimation of Gene Regulatory Networks
Principal Investigator: McCall, Matthew
Organization: University of Rochester
Project Start Date: Sept. 10, 2013
Project End Date: Aug. 31, 2015
Funding Institute: NHGRI
FY Total Cost: $79,893


Project Title: Integrative Statistical Methods and Tools for Analysis of Perturbation Signatures
Principal Investigator: Medvedovic, Mario
Organization: University of Cincinnati
Project Start Date: Sept. 24, 2011
Project End Date: June 30, 2014
Funding Institute: NHLBI
FY Total Cost: $343,462


Project Title: Discovery and Analysis of Structural Variation in Whole Genome Sequences
Principal Investigator: Mills, Ryan
Organization: University of Michigan
Project Start Date: Sept. 13, 2013
Project End Date: July 31, 2017
Funding Institute: NHGRI
FY Total Cost: $382,699


Project Title: Bioconductor: An Open Computing Resource for Genomics
Principal Investigator: Morgan, Martin
Organization: Fred Hutchinson Cancer Research Center
Project Start Date: Sept. 28, 2006
Project End Date: Feb. 29, 2016
Funding Institute: NHGRI
FY Total Cost: $199,999


Project Title: H3ABioNet: A Sustainable African Bioinformatics Network for H3Africa
Principal Investigator: Mulder, Nicola
Organization: University of Cape Town
Project Start Date: Aug. 15, 2012
Project End Date: July 31, 2017
Funding Institute: NHGRI
FY Total Cost: $2,150,374


Project Title: HYPHY: Molecular Evolutionary Analyses
Principal Investigator: Muse, Spencer
Organization: North Carolina State University, Raleigh
Project Start Date: Sept. 15, 2010
Project End Date: Aug. 31, 2014
Funding Institute: NIGMS
FY Total Cost: $265,099


Project Title: A Computational Approach to Developing Heterchiral Peptide Therapeutics
Principal Investigator: Nanda, Vikas
Organization: Robert Wood Johnson Medical School
Project Start Date: Sept. 1, 2010
Project End Date: Aug. 31, 2015
Funding Institute: NIGMS
FY Total Cost: $303,801


Project Title: Computational Tools for Mass Spectrometry-based Interactome Data
Principal Investigator: Nesvizhskii, Alexey
Organization: University of Michigan
Project Start Date: Sept. 1, 2010
Project End Date: Aug. 31, 2014
Funding Institute: NIGMS
FY Total Cost: $377,586


Project Title: Develop New Mathematical and Computational Tools for Modeling
Principal Investigator: Nie, Qing
Organization: University of California, Irvine
Project Start Date: Not Listed
Project End Date: Not Listed
Funding Institute: NIGMS
FY Total Cost: $311,942


Project Title: Methods for the Analysis of RNA-seq and Related Sequence Census-based Experiments
Principal Investigator: Pachter, Lior
Organization: University of California, Berkeley
Project Start Date: Aug. 19, 2011
Project End Date: May 31, 2014
Funding Institute: NHGRI
FY Total Cost: $353,656


Project Title: Computational Approaches to Protein Identification and Quantification using MS/MS
Principal Investigator: Radivojac, Pedrag
Organization: Indiana University
Project Start Date: May 1, 2007
Project End Date: July 31, 2016
Funding Institute: NIGMS
FY Total Cost: $396,933


Project Title: Clinical Genome Inference System: Variant Prioritization for Clinical Diagnostics
Principal Investigator: Reese, Martin
Organization: Omicia
Project Start Date: June 6, 2012
Project End Date: Aug. 31, 2014
Funding Institute: NHGRI
FY Total Cost: $781,754


Project Title: Trinity: Transcriptome Assembly for Genetic and Functional Analysis of Cancer
Principal Investigator: Regev, Aviv
Organization: Broad Institute
Project Start Date: Sept. 17, 2013
Project End Date: Aug. 31, 2018
Funding Institute: NCI
FY Total Cost: $678,887


Project Title: The Cancer Bioinformatics Initiative
Principal Investigator: Robbins, Kay
Organization: University of Texas, San Antonio
Project Start Date: Sept. 11, 2012
Project End Date: Aug. 31, 2016
Funding Institute: NCI
FY Total Cost: $134,686

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