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Funding Update: NIH Bioinformatics Grants Awarded April 5 — May 24, 2012, Part 2

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Part 2 of 2

Project Title: Machine Learning for Identifying Adverse Drug Events
Principal Investigator: Page, David C.
Organization: University of Wisconsin, Madison
Project Start Date: June 10, 2011
Project End Date: April 30, 2014
Funding Institute: NIGMS
FY Total Cost: $537,272


Project Title: Informatics Methods for Identifying Breast Cancer Control Genes and Proteins
Principal Investigator: Parvin, Jeffrey D.
Organization: Ohio State University
Project Start Date: June 1, 2009
Project End Date: April 30, 2014
Funding Institute: NCI
FY Total Cost: $450,687


Project Title: The Implementation of a Pharmacogenomics-based Algorithm for Warfarin Dosing
Principal Investigator: Perera, Minoli
Organization: University of Chicago
Project Start Date: July 15, 2009
Project End Date: April 30, 2014
Funding Institute: NHLBI
FY Total Cost: $120,339


Project Title: Stochastic Simulation Service: A Cloud Computing Framework for Modeling and Simulation
Principal Investigator: Petzold, Linda R.
Organization: University of California, Santa Barbara
Project Start Date: May 15, 2012
Project End Date: April 30, 2015
Funding Institute: NIBIB
FY Total Cost: $597,706


Project Title: Computational and Functional Approaches to Validating Cancer Genome Targets
Principal Investigator: Powers, Scott
Organization: Cold Spring Harbor Laboratory
Project Start Date: May 1, 2012
Project End Date: April 30, 2017
Funding Institute: NCI
FY Total Cost: $1,405,573


Project Title: Methods for Genome-Wide Association Studies in Admixed Populations
Principal Investigator: Price, Alkes L.
Organization: Harvard University
Project Start Date: June 15, 2011
Project End Date: April 30, 2016
Funding Institute: NHGRI
FY Total Cost: $515,000


Project Title: New Algorithms and Tools for Large-Scale Genomic Analyses
Principal Investigator: Quinlan, Aaron R.
Organization: University of Virginia, Charlottesville
Project Start Date: April 19, 2012
Project End Date: March 31, 2016
Funding Institute: NHGRI
FY Total Cost: $437,112


Project Title: Statistical Methods for Analyzing Antigen Receptors Data
Principal Investigator: Rempala, Grzegorz A.
Organization: Georgia Health Sciences University
Project Start Date: July 1, 2010
Project End Date: April 30, 2015
Funding Institute: NCI
FY Total Cost: $217,094


Project Title: Analysis of LC-MS Data to Identify Peptide and Glycan Biomarkers for Hepatocellular Carcinoma
Principal Investigator: Ressom, Habtom W.
Organization: Georgetown University
Project Start Date: Sept. 1, 2010
Project End Date: April 30, 2015
Funding Institute: NCI
FY Total Cost: $278,062


Project Title: Alignment Software for Second Generation Sequencing
Principal Investigator: Salzberg, Steven
Organization: Johns Hopkins University
Project Start Date: July 6, 2011
Project End Date: April 30, 2014
Funding Institute: NHGRI
FY Total Cost: $693,815


Project Title: Commodity Hardware Acceleration of Popular Modeling Software for Structural Biology
Principal Investigator: Schulten, Klaus
Organization: University of Illinois, Urbana-Champaign
Project Start Date: July 15, 2011
Project End Date: April 30, 2015
Funding Institute: NIGMS
FY Total Cost: $298,585


Project Title: Statistical Methods for Family-Based Association Studies
Principal Investigator: Sha, Qiuying
Organization: Michigan Technological University
Project Start Date: May 17, 2012
Project End Date: March 31, 2014
Funding Institute: NHGRI
FY Total Cost: $78,000


Project Title: Project III – Computational Analysis of Phenotypes
Principal Investigator: Sucgang, Richard
Organization: Baylor College of Medicine
Funding Institute: NICHD
FY Total Cost: $163,665


Project Title: Molecular Sequence Analysis Using Word Counts: Statistics Power and Applications
Principal Investigator: Sun, Fengzhu
Organization: University of Southern California
Project Start Date: July 22, 2011
Project End Date: April 30, 2013
Funding Institute: NHGRI
FY Total Cost: $245,750


Project Title: Empowering Personalized Medicine: Integrating Imaging, Genetics, and Biomarkers
Principal Investigator: Thompson, Paul M.
Organization: University of California, Los Angeles
Project Start Date: May 1, 2012
Project End Date: April 30, 2015
Funding Institute: NIMH
FY Total Cost: $486,695


Project Title: Context-Sensitive Search of Human Expression Compendia
Principal Investigator: Troyanskaya, Olga
Organization: Princeton University
Project Start Date: June 28, 2011
Project End Date: April 30, 2014
Funding Institute: NHGRI
FY Total Cost: $383,572


Project Title: Database-Centric Data Analysis of Molecular Simulations
Principal Investigator: Tu, Yicheng
Organization: University of South Florida
Project Start Date: April 15, 2010
Project End Date: May 31, 2015
Funding Institute: NIGMS
FY Total Cost: $173,300


Project Title: Continual Development of Protein Docking Algorithms
Principal Investigator: Weng, Zhiping
Organization: University of Massachusetts
Project Start Date: May 1, 2009
Project End Date: April 30, 2013
Funding Institute: NIGMS
FY Total Cost: $306,331


Project Title: Quantitative Analysis of Epidermal Growth Factor Receptor Signaling Networks
Principal Investigator: White, Forest
Organization: Massachusetts Institute of Technology
Project Start Date: June 1, 2008
Project End Date: April 30, 2013
Funding Institute: NCI
FY Total Cost: $321,873


Project Title: ODF: Support Infrastructure for Next-Gen Sequence Storage Analysis and Management
Principal Investigator: White, Owen
Organization: University of Maryland, Baltimore
Project Start Date: May 15, 2012
Project End Date: April 30, 2015
Funding Institute: NHGRI
FY Total Cost: $934,188


Project Title: Genome-Wide Association Analysis of Bladder Cancer
Principal Investigator: Wu, Xifeng
Organization: University of Texas
Project Start Date: April 1, 2008
Project End Date: March 31, 2013
Funding Institute: NCI
FY Total Cost: $769,079


Project Title: New Computational Methods for Data-Driven Protein Structure Prediction
Principal Investigator: Xu, Jinbo
Organization: Toyota Technological Institute, Chicago
Project Start Date: May 14, 2010
Project End Date: April 30, 2015
Funding Institute: NIGMS
FY Total Cost: $265,869


Project Title: Mass Informatics of Two Dimensional Gas Chromatography Time-of-Flight Mass Spectrometry
Principal Investigator: Zhang, Xiang
Organization: University of Louisville
Project Start Date: May 1, 2009
Project End Date: April 30, 2013
Funding Institute: NIGMS
FY Total Cost: $323,441


Project Title: Mapping the Genetic Architecture of Complex Disease via RNA-Seq and GWAS Data
Principal Investigator: Zhao, Zhongming
Organization: Vanderbilt University
Project Start Date: May 1, 2012
Project End Date: April 30, 2015
Funding Institute: NLM
FY Total Cost: $349,313


Project Title: Statistical Methods for Analyzing High-Throughput Genotype Data
Principal Investigator: Zhu, Xiaofeng
Organization: Case Western Reserve University
Project Start Date: March 15, 2005
Project End Date: April 30, 2013
Funding Institute: NHGRI
FY Total Cost: $388,575


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