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Funding Update: Mar 26, 2010

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NIH Bioinformatics Grants awarded Feb. 23 — March. 25, 2010

Algorithmic Strategies for Detecting Structural Variation in Genomes
Principal investigator: Bafna, Vineet
Organization: University of California San Diego
Project start date: April 1, 2009
Project end date: Feb. 28, 2013
NIH institute: NHGRI
FY 2010 funding amount: $326,175


APBS: Nanoscale Biomolecular Electrostatics Software
Principal investigator: Baker, Nathan
Organization: Washington University
Project start date: Jan. 15, 2004
Project end date: Feb. 28, 2013
NIH institute: NIGMS
FY 2010 funding amount: $306,713


Advanced Electrostatic Computation in Molecular Dynamics
Principal investigator: Boschitsch, Alexander
Organization: Continuum Dynamics
Project start date: May 1, 2005
Project end date: Feb. 28, 2012
NIH institute: NIGMS
FY 2010 funding amount: $381,595


Genomics & Bioinformatics
Principal investigator: Brennan, Cameron
Organization: Memorial Sloan-Kettering Cancer Center
Project start date: March 1, 2010
Project end date: Feb. 28, 2011
NIH institute: NCI
FY 2010 funding amount: $199,507


Integrated, Interdisciplinary, Inter-University PhD Program in Computational Biology
Principal investigator: Brown, James
Organization: University of New Mexico
Project start date: March 1, 2009
Project end date: Feb. 28, 2014
NIH institute: NIBIB
FY 2010 funding amount: $196,262


Center for The Analysis of Cellular Mechanisms and Systems Biology
Principal investigator: Dratz, Edward
Organization: Montana State University (Bozeman)
Project start date: Sept. 26, 2008
Project end date: Feb. 28, 2013
NIH institute: NCRR
FY 2010 funding amount: $2,048,794


Bioinformatics/Biostatistics Core
Principal investigator: Fiser, Andras
Organization: Albert Einstein College of Medicine at Yeshiva University
Project start date: March 1, 2010
Project end date: Feb. 28, 2011
NIH institute: NIDA
FY 2010 funding amount: $196,624


Systems Biology & Integrative Networks Core
Principal investigator: Fox, Howard
Organization: University of Nebraska Medical Center
Project start date: March 1, 2010
Project end date: Feb. 28, 2011
NIH institute: NIMH
FY 2010 funding amount: $334,030


Computational Biology Core
Principal investigator: Garner, Harold
Organization: University of Texas Southwestern Medical Center, Dallas
Project start date: March 1, 2010
Project end date: Feb. 28, 2011
NIH institute: NIAID
FY 2010 funding amount: $409,430


Flybase: A Drosophila Genomic and Genetic Database
Principal investigator: Gelbart, William Martin
Organization: Harvard University
Project start date: Aug. 1, 1992
Project end date: Dec. 31, 2013
NIH institute: NHGRI
FY 2010 funding amount: $4,234,145


Core — Computation
Principal investigator: Hood, Leroy
Organization: Institute for Systems Biology
Project start date: March 1, 2010
Project end date: Feb. 28, 2011
NIH institute: NIGMS
FY 2010 funding amount: $305,841


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Protein Simulations with a Fast Polarizable Force Field
Principal investigator: Kaminski, George
Organization: Worcester Polytechnic institute
Project start date: March 1, 2007
Project end date: Feb. 29, 2012
NIH institute: NIGMS
FY 2010 funding amount: $284,848


Bioinformatics and Integrative/Comparative Genomics
Principal investigator: Kohane, Isaac
Organization: Children's Hospital Boston
Project start date: NA
Project end date: NA
NIH institute: NINDS
FY 2010 funding amount: $150,337


Biostatistics & Informatics
Principal investigator: Le, Chap
Organization: University of Minnesota Twin Cities
Project start date: Feb. 1, 2010
Project end date: Jan. 31, 2011
NIH institute: NCI
FY 2010 funding amount: $352,222


Computational Assembly of Beta Barrel Membrane Protein
Principal investigator: Liang, Jie
Organization: University of Illinois at Chicago
Project start date: March 1, 2007
Project end date: Feb. 29, 2012
NIH institute: NIGMS
FY 2010 funding amount: $279,121


Data Management and Analysis
Principal investigator: Mcculloch, Charles
Organization: University of California San Francisco
Project start date: NA
Project end date: NA
NIH institute: NINDS
FY 2010 funding amount: $285,657


Bioinformatics and Biostatistics
Principal investigator: Mcweeney, Shannon
Organization: Oregon Health and Science University
Project start date: March 1, 2010
Project end date: Feb. 28, 2011
NIH institute: NIAID
FY 2010 funding amount: $306,427


Extending Intermine to Yeast, Rat, and Zebrafish Model Organism Databases
Principal investigator: Micklem, Gos, et al.
Organization: University of Cambridge
Project start date: March 26, 2009
Project end date: Feb. 28, 2011
NIH institute: NHGRI
FY 2010 funding amount: $567,842


Collaborative Development of Biomedical Ontologies and Terminologies
Principal investigator: Musen, Mark
Organization: Stanford University
Project start date: March 1, 2009
Project end date: Feb. 28, 2013
NIH institute: NIGMS
FY 2010 funding amount: $525,262


An Efficient Lightweight Environment for Biomedical Computation
Principal investigator: Nekrutenko, Anton
Organization: Pennsylvania State University, University Park
Project start date: May 1, 2009
Project end date: Feb. 29, 2012
NIH institute: NHGRI
FY 2010 funding amount: $420,692


Scalable Learning With Ensemble Techniques and Parallel Computing
Principal investigator: Nilsson, Erik
Organization: InSilicos
Project start date: May 1, 2008
Project end date: Feb. 29, 2012
NIH institute: NIGMS
FY 2010 funding amount: $376,899


Machine Learning Analysis of Tandem Mass Spectra
Principal investigator: Noble, William Stafford
Organization: University of Washington
Project start date: March 1, 2007
Project end date: Feb. 28, 2011
NIH institute: NIBIB
FY 2010 funding amount: $593,600


Bioinformatics Software for Analyzing Microbial Genomes
Principal investigator: Salzberg, Steven
Organization: University of Maryland College Park Campus
Project start date: March 25, 2008
Project end date: Feb. 29, 2012
NIH institute: NIGMS
FY 2010 funding amount: $273,983


Computational Methods for Uncovering Protein Function in Plasmodium Falciparum
Principal investigator: Singh, Mona
Organization: Princeton University
Project start date: March 1, 2010
Project end date: Feb. 28, 2012
NIH institute: NIAID
FY 2010 funding amount: $239,112


BioHDF — Open Binary File Standards for Bioinformatics
Principal investigator: Smith, Todd
Organization: Geospiza
Project start date: March 17, 2009
Project end date: Feb. 28, 2011
NIH institute: NHGRI
FY 2010 funding amount: $615,367


Bioinformatics Core
Principal investigator: Spellman, Paul
Organization: University of California San Francisco
Project start date: Dec. 1, 2009
Project end date: Nov. 30, 2010
NIH institute: NCI
FY 2010 funding amount: $134,602


Reactome: An Open Knowledgebase of Human Pathways
Principal investigator: Stein, Lincoln
Organization: Ontario Institute for Cancer Research
Project start date: April 1, 2007
Project end date: Feb. 28, 2011
NIH institute: NHGRI
FY 2010 funding amount: $858,478


BioGrid: An Open Resource for Biological Interactions and Network Analysis
Principal investigator: Tyers, Michael David
Organization: Mt. Sinai Hospital, Samuel Lunenfeld Research Institute
Project start date: May 15, 2007
Project end date: Feb. 28, 2011
NIH institute: NCRR
FY 2010 funding amount: $603,323


A Multistage Approach to Protein-Protein Docking
Principal investigator: Vajda, Sandor
Organization: Boston University
Project start date: Sept. 1, 2000
Project end date: Feb. 28, 2013
NIH institute: NIGMS
FY 2010 funding amount: $263,835


Statistical Methods to Map Genes for Complex Traits
Principal investigator: Zhao, Hongyu
Organization: Yale University
Project start date: Feb. 1, 1999
Project end date: Feb. 28, 2014
NIH institute: NIGMS
FY 2010 funding amount: $351,688

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