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Funding Update: Aug 12, 2011 (rev. 1)

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NIH bioinformatics grants awarded July 15 — August 10, 2011

Project Title: The Protein Structure Initiative Knowledgebase
Principal Investigator: Berman, Helen
Organization: Rutgers, The State University of New Jersey
Project Start Date: July 1, 2010
Project End Date: June 30, 2015
Funding Institute: NIGMS
FY Total Cost: $2,323,677


Project Title: Predicting Protein-Data Interactions with Structural Models
Principal Investigator: Bradley, Philip
Organization: Fred Hutchinson Cancer Research Center
Project Start Date: Aug.10, 2009
Project End Date: July 31, 2014
Funding Institute: NIGMS
FY Total Cost: $326,021


Project Title: Data Integration Core
Principal Investigator: Brittnacher, Mitchell
Organization: University of Washington
Project Start Date: Mar. 01, 2011
Project End Date: Feb. 28, 2014
Funding Institute: NIAID
FY Total Cost: $470,350


Project Title: The Cancer Genome Atlas Data Analysis Center
Principal Investigator: Chin, Lynda
Organization: Broad Institute
Project Start Date: Sept 29, 2009
Project End Date: July 31, 2014
Funding Institute: NCI
FY Total Cost: $2,535,444


Project Title: New Mathematical Methods for Protein Loop Modeling
Principal Investigator: Coutsias, Evangelos
Organization: University of New Mexico
Project Start Date: Aug. 01, 2009
Project End Date: July 31, 2013
Funding Institute: NIGMS
FY Total Cost: $313,211


Project Title: Collaborative Research: Multistability in Biological Networks
Principal Investigator: Craciun, Gheorghe
Organization: University of Wisconsin, Madison
Project Start Date: Sept 01, 2008
Project End Date: July 31, 2013
Funding Institute: NIGMS
FY Total Cost: $292,882


Project Title: VisANT-Predictome: A System for Integration, Mining, Visualization, and Analysis
Principal Investigator: Delisi, Charles
Organization: Boston University
Project Start Date: Apr. 01, 2006
Project End Date: June 30, 2016
Funding Institute: NCRR
FY Total Cost: $809,825


Project Title: A Desktop Assembly and Analysis Pipeline for Next-Gen Metagenomic Sequencing
Principal Investigator: Durfee, Timothy
Organization: DNAStar
Project Start Date: Aug. 05, 2011
Project End Date: Jan. 31, 2012
Funding Institute: NHGRI
FY Total Cost: $152,857


Project Title: Extension of the Sequence Ontology: Preparing for the (Re) Sequencing Revolution
Principal Investigator: Eilbeck, Karen Louise
Organization: University of Utah
Project Start Date: Aug. 15, 2007
Project End Date: Apr. 30, 2014
Funding Institute: NHGRI
FY Total Cost: $300,000


Project Title: Data Coordinating Center, Microbiome of the Lung and Respiratory Tract
Principal Investigator: Foulkes, Mary
Organization: George Washington University
Project Start Date: Sept. 29, 2009
Project End Date: July 31, 2014
Funding Institute: NHLBI
FY Total Cost: $639,423


Project Title: Novel Computational Tools for Studying the Human Microbiome
Principal Investigator: Fredericks, David Neal
Organization: Fred Hutchinson Cancer Research Center
Project Start Date: Sept. 27, 2010
Project End Date: June 30, 2013
Funding Institute: NHGRI
FY Total Cost: $495,844


Project Title: Technology Development for a MolBio Knowledgebase
Principal Investigator: Hunter, Lawrence
Organization: University of Colorado, Denver
Project Start Date: Dec. 01, 2003
Project End Date: July 31, 2013
Funding Institute: NLM
FY Total Cost: $597,135


Project Title: Resource for Analysis, Visualization, and Integration of Networks
Principal Investigator: Ideker, Trey
Organization: University of California, San Diego
Project Start Date: Sept. 13, 2010
Project End Date: June 30, 2015
Funding Institute: NCRR
FY Total Cost: $1,163,060


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Project Title: Novel Computational Methods for Modeling Cytochrome P450 Medicated Drug Metabolism
Principal Investigator: Lill, Markus Alexander
Organization: Purdue University, West Lafayette
Project Start Date: Sept. 01, 2010
Project End Date: July 31, 2015
Funding Institute: NIGMS
FY Total Cost: $218,252


Project Title: Bioinformatics Data Analysis and Coordination Center at Baylor College of Medicine
Principal Investigator: Milosavljevic, Aleksandar
Organization: Purdue University, West Lafayette
Project Start Date: Sept. 20, 2008
Project End Date: July 31, 2013
Funding Institute: NIDA
FY Total Cost: $1,310,400


Project Title: Bioinformatics Strategies: Biodefense Vaccine Research
Principal Investigator: Moore, Jason
Organization: Dartmouth College
Project Start Date: Aug. 01, 2004
Project End Date: July 31, 2013
Funding Institute: NIAID
FY Total Cost: $477,205


Project Title: Software for the Analysis of Large-Scale Genotyping and Sequencing Studies
Principal Investigator: Purcell, Shaun Organization: Massachusetts General Hospital
Project Start Date: Sept. 27, 2010
Project End Date: June 30, 2013
Funding Institute: NHGRI
FY Total Cost: $350,460


Project Title: Model-Based Methods for Analyzing ChIP Sequencing Data
Principal Investigator: Qin, Zhaohui Steve
Organization: Emory University
Project Start Date: July 22, 2009
Project End Date: June 30, 2013
Funding Institute: NHGRI
FY Total Cost: $249,839


Project Title: Statistical Methods to Analyze Resequencing Data
Principal Investigator: Qin, Zhaohui Steve
Organization: Emory University
Project Start Date: Sept. 27, 2010
Project End Date: July 31, 2012
Funding Institute: NHGRI
FY Total Cost: $192,719


Project Title: Computational Drug Discovery with Polarizable Potential Energy Function
Principal Investigator: Ren, Pengyu
Organization: University of Texas, Austin
Project Start Date: Sept. 01, 2007
Project End Date: July 31, 2012
Funding Institute: NIGMS
FY Total Cost: $216,602


Project Title: Computational Biology, Bioinformatics, Imaging & Proteomics Research - RCMI
Principal Investigator: Southerland, William
Organization: Howard University
Project Start Date: Sept. 30, 1997
Project End Date: June 30, 2014
Funding Institute: NCRR
FY Total Cost: $2,297,643


Project Title: Molecular Sequence Analysis Using Words Counts: Statistics Power and Applications
Principal Investigator: Sun, Fengzhu
Organization: University of Southern California
Project Start Date: July 22, 2011
Project End Date: Apr. 30, 2013
Funding Institute: NHGRI
FY Total Cost: $203,750


Project Title: Bayesian Analysis of Structural Shape and Conformation
Principal Investigator: Theobald, Douglas Lowell
Organization: Brandeis University
Project Start Date: Aug. 05, 2010
Project End Date: July 31, 2015
Funding Institute: NIGMS
FY Total Cost: $287,161


Project Title: Statistical Methods for Prospective Evaluation of Biomarkers
Principal Investigator: Zheng, Yingye
Organization: Fred Hutchinson Cancer Research Center
Project Start Date: Sept 04, 2009
Project End Date: July 31, 2013
Funding Institute: NIGMS
FY Total Cost: $324,952


Project Title: Development, Evaluation, and Testing of the Sesame LIMS
Principal Investigator: Zolnai, Zsolt
Organization: University of Wisconsin, Madison
Project Start Date: Sept 01, 2007
Project End Date: July 31, 2013
Funding Institute: NIGMS
FY Total Cost: $270,241


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