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Funding Update: Jul 15, 2011

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NIH bioinformatics grants awarded June 16 — July 15, 2011

Project Title: Graduate Training in Biomedical Informatics
Principal Investigator: Altman, Russ
Organization: Stanford University
Project Start Date: July 1, 1984
Project End Date: June 30, 2012
Funding Institute: NLM
FY Total Cost: $884,265


Project Title: Bioinformatics Analysis of Control Mechanisms of Hypermetabolism
Principal Investigator: Androulakis, Ioannis
Organization: Rutgers, the State University of New Jersey, New Brunswick
Project Start Date: Sept 1, 2008
Project End Date: June 30, 2012
Funding Institute: NIGMS
FY Total Cost: $306,997


Project Title: Training Program in Bioinformatics
Principal Investigator: Athey, Brian David
Organization: University of Michigan, Ann Arbor
Project Start Date: July 1, 2005
Project End Date: June 30, 2016
Funding Institute: NIGMS
FY Total Cost: $176,752


Project Title: BiologicalNetworks: Integrated Environment for Systems Biology
Principal Investigator: Baitaluk, Michael
Organization: University of California, San Diego
Project Start Date: Sept 1, 2008
Project End Date: June 30, 2012
Funding Institute: NIGMS
FY Total Cost: $415,147


Project Title: A Gene-Set Approach for Pathway Analysis of Genome-Wide SNP Data with Application
Principal Investigator: Basu, Saonli
Organization: University of Minnesota, Twin Cities
Project Start Date: July 1, 2010
Project End Date: June 30, 2012
Funding Institute: NIDDK
FY Total Cost: $214,495


Project Title: Human Neurobehavioral Phenotypes Associates with the Extended PWS/AS Domain
Principal Investigator: Beaudet, Arthur
Organization: Baylor College of Medicine
Project Start Date: Jan. 1, 1999
Project End Date: May 31, 2015
Funding Institute: NICHD
FY Total Cost: $628,392


Project Title: Algorithms and Software for Protein-Family De Novo Sequencing
Principal Investigator: Bern, Marshall Wayne
Organization: Palo Alto Research Center
Project Start Date: Aug. 1, 2010
Project End Date: June 30, 2012
Funding Institute: NIGMS
FY Total Cost: $251,534


Project Title: Beyond Heuristics; A Tool for the Rigorous Statistical Analysis of –Seq Assays
Principal Investigator: Bickel, Peter
Organization: University of California, Berkeley
Project Start Date: June 27, 2011
Project End Date: May 31, 2013
Funding Institute: NHGRI
FY Total Cost: $185,134


Project Title: EDAC: Encode Data Analysis Center
Principal Investigator: Birney, Ewan
Organization: Stanford University
Project Start Date: May 15, 2008
Project End Date: Mar 31, 2012
Funding Institute: NHGRI
FY Total Cost: $1,808,211


Project Title: Improving Genotype Accuracy and Haplotypic Analysis for Genome-Wide Studies
Principal Investigator: Browning Brian, Lee
Organization: University of Washington
Project Start Date: Aug 7, 2009
Project End Date: June 30, 2012
Funding Institute: NHGRI
FY Total Cost: $202,776


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Project Title: Computational Methods for the Analysis of RNA-Seq Data
Principal Investigator: Dewey, Colin Noel
Organization: University of Wisconsin, Madison
Project Start Date: July 1, 2010
Project End Date: April 30, 2013
Funding Institute: NHGRI
FY Total Cost: $271,791


Project Title: Computational Methods for Functional Genomic Discovery from Gene Knockout Studies
Principal Investigator: Drake, Kenneth
Organization: Seralogix
Project Start Date: July 1, 2007
Project End Date: June 30, 2012
Funding Institute: NHGRI
FY Total Cost: $596,710


Project Title: Integration of Phenotype Data from Multiple Centers Using Ontologies
Principal Investigator: Dwinell, Melinda
Organization: Medical College of Wisconsin
Project Start Date: July 15, 2010
Project End Date: June 30, 2013
Funding Institute: NHLBI
FY Total Cost: $380,000


Project Title: Predoctoral Training Program in Bioinformatics and Computational Biology
Principal Investigator: Elston, Timothy
Organization: University of North Carolina, Chapel Hill
Project Start Date: July 1, 2005
Project End Date: June 30, 2015
Funding Institute: NIGMS
FY Total Cost: $141,977


Project Title: Center for Critical Assessment of Structure Prediction
Principal Investigator: Fidelis, Krzysztof
Organization: University of California, Davis
Project Start Date: Aug 1, 2004
Project End Date: June 14, 2012
Funding Institute: NLM
FY Total Cost: $515,168


Project Title: Computational Methods for Structural-Functional Studies of Proteins
Principal Investigator: Grishin, Nick
Organization: Stanford University
Project Start Date: July 1, 2010
Project End Date: June 31, 2014
Funding Institute: NIGMS
FY Total Cost: $305,984


Project Title: Bioinformatics and Computational Biology Training Program
Principal Investigator: Harper, John
Organization: Duke University
Project Start Date: July 1, 2005
Project End Date: June 30, 2016
Funding Institute: NIGMS
FY Total Cost: $176,752


Project Title: Bioinformatics Core
Principal Investigator: Hu, Howard
Organization: University of Michigan, Ann Arbor
Funding Institute: NIEHS
FY Total Cost: $51,956


Project Title: Continued Development and Support of Essential SBML Infrastructure Software
Principal Investigator: Hucka, Michael
Organization: California Institute of Technology
Project Start Date: Feb 1, 2004
Project End Date: June 30, 2013
Funding Institute: NIGMS
FY Total Cost: $745, 286


Project Title: Collaborative Research: Stochastic Modeling and Estimation of Gene Transcription
Principal Investigator: Kimmel, Marek
Organization: Rice University
Project Start Date: Aug 1, 2008
Project End Date: June 30, 2012
Funding Institute: NIGMS
FY Total Cost: $361,565


Project Title: Computational Analysis of Gene Expression Pattern Images
Principal Investigator: Kumar, Sudhir
Organization: Arizona State University, Tempe
Project Start Date: Apr 1, 2002
Project End Date: Jun 30, 2014
Funding Institute: NHGRI
FY Total Cost: $600,000


Project Title: An Ontology of Qualities for the Annotation of Biomedical Data
Principal Investigator: Lewis, Suzanne
Organization: University of California, Berkeley
Project Start Date: Sep 30, 2009
Project End Date: Jun 30, 2012
Funding Institute: NHGRI
FY Total Cost: $524, 903


Project Title: Bioinformatic Strategy to Identify Calcineurin Interactors in the Human Proteome
Principal Investigator: Li, Huiming
Organization: Stanford University
Project Start Date: Jul 1, 2010
Project End Date: Jun 30, 2012
Funding Institute: NIAID
FY Total Cost: $103,950


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Project Title: Statistical Methods for Gene Mapping Studies in Admixed Populations
Principal Investigator: Li, Mingyao
Organization: University of Pennsylvania
Project Start Date: May 15, 2008
Project End Date: March 31, 2012
Funding Institute: NHGRI
FY Total Cost: $330,988


Project Title: Novel Methods for Effective Analysis Assembly and Comparison of HMP Sequences
Principal Investigator: Li, Weizhong
Organization: University of California, San Diego
Project Start Date: Sept. 9, 2010
Project End Date: Jun 30, 2013
Funding Institute: NHGRI
FY Total Cost: $330,988


Project Title: Continued Maintenance and Development of Software: Integrated Genome Browser
Principal Investigator: Loraine, Ann
Organization: University of North Carolina, Charlotte
Project Start Date: Jul 1, 2011
Project End Date: June 30, 2016
Funding Institute: NCRR
FY Total Cost: $289,807


Project Title: Software Tools for Next Generation Sequencer Data
Principal Investigator: Marth, Gabor
Organization: Boston College
Project Start Date: Sept. 1, 2008
Project End Date: June 30, 2012
Funding Institute: NHGRI
FY Total Cost: $546,108


Project Title: Continued Development of the Celera Whole Genome Shotgun Assembler
Principal Investigator: Miller, Jason Rafe
Organization: Craig Venter Institute
Project Start Date: May 11, 2006
Project End Date: June 30, 2012
Funding Institute: NIGMS
FY Total Cost: $591,152


Project Title: Novel Algorithms and Hardware Designs for Ultra-Fast Next-Gen Sequence Analysis
Principal Investigator: Mutlu, Onur
Organization: Carnegie-Mellon University
Project Start Date: June 20, 2011
Project End Date: April 30, 2015
Funding Institute: NHGRI
FY Total Cost: $369,250


Project Title: Modeling the Structure & Evolution of Regulatory Regions in Eukaryotic Genomics
Principal Investigator: Ohler, Uwe
Organization: Duke University
Project Start Date: July 26, 2007
Project End Date: June 30, 2012
Funding Institute: NHGRI
FY Total Cost: $336,517


Project Title: Machine Learning Analysis of Tandem Mass Spectra
Principal Investigator: Noble, William Stafford
Organization: University of Washington
Project Start Date: March 1, 2007
Project End Date: March 31, 2015
Funding Institute: NIGMS
FY Total Cost: $627,642


Project Title: Alignment Software for Second-Generation Sequencing
Principal Investigator: Salzberg, Steven
Organization: Johns Hopkins University
Project Start Date: July 6, 2011
Project End Date: April 30, 2014
Funding Institute: NHGRI
FY Total Cost: $707,654


Project Title: Analytical Tools to Examine High-Resolution and Genome-Scale DNA Methylation Data
Principal Investigator: Smith, Andrew David
Organization: University of Southern California
Project Start Date: July 1, 2010
Project End Date: June 30, 2014
Funding Institute: NHGRI
FY Total Cost: $378,508


Project Title: Statistical Methods for Genetic Data
Principal Investigator: Storey, John
Organization: Princeton University
Project Start Date: July 1, 2003
Project End Date: June 30, 2012
Funding Institute: NHGRI
FY Total Cost: $292,015


Project Title: Prediction and Network Construction Using High-Throughput Data
Principal Investigator: Yeung-Rhee, Ka Yee
Organization: University of Washington
Project Start Date: Sept. 1, 2008
Project End Date: June 30, 2013
Funding Institute: NIGMS
FY Total Cost: $457,966


Project Title: Statistical Models for Genome Sequencing and Association
Principal Investigator: Zhang, Nancy
Organization: Stanford University
Project Start Date: July 6, 2011
Project End Date: April 30, 2014
Funding Institute: NHGRI
FY Total Cost: $216,462

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