Skip to main content
Premium Trial:

Request an Annual Quote

Funding Update: Mar 18, 2011

Premium

NIH bioinformatics grants awarded Nov. 15 — March 4, 2011
(Part two of two)

Project Title: Gene Ontology Consortium
Principal Investigator: Blake, Judith
Organization: Jackson Laboratory
Project Start Date: Jan. 19, 2001
Project End Date: Feb. 28, 2012
Funding Institute: NHGRI
FY Total Cost: $2,923,298


Project Title: Mouse Phenome Project
Principal Investigator: Bogue, Molly
Organization: Jackson Laboratory
Project Start Date: Jul 1, 2004
Project End Date: Feb. 28, 2015
RFA/PA: PA-07-070
Funding Institute: NIDA
FY Total Cost: $363,893


Project Title: Bioinformatic Approaches to Small Molecule Profiling of Cardiometabolic Disease
Principal Investigator: Deo, Rahul Chandrakant
Organization: University of California, San Francisco
Project Start Date: Jul 15, 2010
Project End Date: Feb. 28, 2015
RFA/PA: PA-09-042
Funding Institute: NHLBI
FY Total Cost: $136,958


Project Title: Algorithmic Strategies for Detecting Structural Variation in Genomes
Principal Investigator: Bafna, Vineet
Organization:/strong> University of California, San Diego
Project Start Date: Apr. 1, 2009
Project End Date: Feb. 28, 2013
RFA/PA: PA-07-344
Funding Institute: NHGRI
FY Total Cost: $292,427


Project Title: Flybase: A Drosophila Genomic and Genetic Database
Principal Investigator: Gelbart, William M
Organization: Harvard University
Project Start Date: Aug. 1, 1992
Project End Date: Dec. 31, 2013
Funding Institute: NHGRI
FY Total Cost: $3,764,130


Project Title: Connjur: A Software Integration Platform for Biomolecular NMR Spectroscopy
Principal Investigator: Gryk, Michael R
Organization: University of Connecticut
Project Start Date: Dec. 1, 2008
Project End Date: Nov. 30, 2012
RFA/PA: PA-07-344
Funding Institute: NIGMS
FY Total Cost: $268,487


Project Title: Computer Simulations of Electron Transfer Proteins
Principal Investigator: Ichiye, Toshiko
Organization: Georgetown University
Project Start Date: Feb. 1, 1992
Project End Date: Nov. 30, 2013
RFA/PA: PA-07-070
Funding Institute: NIGMS
FY Total Cost: $271,180


Project Title: Rat Genome Database
Principal Investigator: Jacob, Howard
Organization: Medical College of Wisconsin
Project Start Date: Sept. 30, 1999
Project End Date: Nov. 30, 2014
RFA/PA: PA-07-070
Funding Institute: NHLBI, NIEHS, NIGRI, NIDCD
FY Total Cost: $1,695,538


Project Title: Methods for the Analysis and Integrations of Next-Generation Sequencing with Applications
Principal Investigator: Johnson, William E
Organization: Brigham Young University
Project Start Date: June 1, 2010
Project End Date: Feb. 28, 2015
RFA/PA: PA-07-458 RFA-RR-08-002
Funding Institute: NHGRI
FY Total Cost: $303,480


[ pagebreak ]

Project Title: Computer-Aided Design of Anti-HIV Drugs
Principal Investigator: Jorgensen, William
Organization: Yale University
Project Start Date: Jan. 1, 1999
Project End Date: Dec. 31, 2012
Funding Institute: NIAID
FY Total Cost: $294,921


Project Title: Bioinformatics Research Network Coordinating Center
Principal Investigator: Kesselman, Carl
Organization: University of Southern California
Project Start Date: Dec. 15, 2008
Project End Date: Nov. 30, 2013
RFA/PA: RFA-RR-08-002
Funding Institute: NCRR
FY Total Cost: $3,995,952


Project Title: Web Software for Drug Targeting Signaling Networks in Primary Cell Subsets
Principal Investigator: Kotecha, Nikesh
Organization: Cytobank
Project Start Date: Feb. 9, 2011
Project End Date: Feb. 8, 2012
RFA/PA: PAR-09-220
Funding Institute: NIGMS
FY Total Cost: $150,225


Project Title: Computational Assembly of Beta Barrel Membrane Protein
Principal Investigator: Liang, Jie
Organization: University of Illinois, Chicago
Project Start Date: March 1, 2007
Project End Date: Feb. 29, 2012
Funding Institute: NIGMS
FY Total Cost: $251,293


Project Title: Statistical Methods in Cancer Research
Principal Investigator: Lin, Danyu
Organization: University of North Carolina, Chapel Hill
Project Start Date: April 1, 2000
Project End Date: Jan. 31, 2012
RFA/PA: PA-07-070
Funding Institute: NCI
FY Total Cost: $218,892


Project Title: Flexible Statistical Machine Learning Techniques for Cancer-Related Data
Principal Investigator: Liu, Yufeng
Organization: University of North Carolina, Chapel Hill
Project Start Date: Feb. 1, 2010
Project End Date: Dec. 31, 2014
RFA/PA: PA-07-021
Funding Institute: NCI
FY Total Cost: $271,428


Project Title: National Biomedical NMR Resource at Madison
Principal Investigator: Markley, John
Organization: University of Wisconsin, Madison
Project Start Date: March 1, 1997
Project End Date: Feb. 28, 2015
RFA/PA: PAR-08-259
Funding Institute: NCRR
FY Total Cost: $925,146


Project Title: Supporting Integrative Genomic Analysis Users with GenePattern
Principal Investigator: Mesirov, Jill
Organization: Broad Institute
Project Start Date: June 1, 2005
Project End Date: Dec. 31, 2014
RFA/PA: PAR-08-010
Funding Institute: NIGMS
FY Total Cost: $556,053


Project Title: INIA-Stress: Informatics and Analysis Core
Principal Investigator: Miles, Michael
Organization: Virginia Commonwealth University
Project Start Date: Feb. 20, 2007
Project End Date: Jan. 31, 2012
RFA/PA: RFA-AA-06-101
Funding Institute: NIAAA
FY Total Cost: $355,973


Project Title: An Efficient Lightweight Environment for Biomedical Computation
Principal Investigator: Nekrutenko Anton
Organization: Pennsylvania State University
Project Start Date: May 1, 2009
Project End Date: Feb. 29, 2012
RFA/PA: PAR-07-344
Funding Institute: NHGRI
FY Total Cost: $387,002


[ pagebreak ]

Project Title: Scalable Learning with Ensemble Techniques and Parallel Computing
Principal Investigator: Nilsson, Erik
Organization: Insilicos
Project Start Date: May 1, 2008
Project End Date: Feb. 29, 2012
RFA/PA: PAR-07-160
Funding Institute: NIGMS
FY Total Cost: $374,673


Project Title: Computational Approaches for Structural Variation Studied in Genomes
Principal Investigator: Raphael, Benjamin
Organization: Brown University
Project Start Date: Jan. 1, 2011
Project End Date: Nov. 30, 2015
RFA/PA: PA-10-067
Funding Institute: NHGRI
FY Total Cost: $505,952


Project Title: Gene Expression Database for Mouse Development
Principal Investigator: Ringwald, Martin
Organization: Jackson Laboratory
Project Start Date: Dec. 2, 2010
Project End Date: Nov. 30, 2015
RFA/PA: PA-08-180
Funding Institute: NICHD
FY Total Cost: $2,282,840


Project Title: Computational Discovery and Analysis of Community Structures in Biology Networks
Principal Investigator: Ruan, Jianhua
Organization: University of Texas, San Antonio
Project Start Date: Jan. 1, 2009
Project End Date: Dec. 31, 2012
RFA/PA: PA-08-028
Funding Institute: NIGMS
FY Total Cost: $97,538


Project Title: Bioinformatics Software for Analyzing Microbial Genomes
Principal Investigator: Salzberg, Steven
Organization: University of Maryland
Project Start Date: Mar. 25, 2008
Project End Date: Feb. 29, 2012
RFA/PA: PAR-07-235
Funding Institute: NIGMS
FY Total Cost: $246,585


Project Title: Statistical and Computational Tools for Reconstruction of Gene Regulatory Networks
Principal Investigator: Salzman, Peter
Organization: University of Rochester
Project Start Date: Jan. 1, 2009
Project End Date: Aug. 17, 2011
RFA/PA: PA-06-133
Funding Institute: NLM
FY Total Cost: $86,774


Project Title: Enhancing the Biomedical Computing Platform for Pancreatic Cancer Research
Principal Investigator: Sherman, Simon
Organization: University of Nebraska
Project Start Date: April 1, 2010
Project End Date: Jan. 31, 2015
RFA/PA: PAR-07-344
Funding Institute: NCI
FY Total Cost: $280,092


Project Title: Computational Methods for Uncovering Protein Function in Plasmodium Falciparum
Principal Investigator: Singh, Mona
Organization: Princeton University
Project Start Date: March 1, 2010
Project End Date: Feb. 29, 2012
RFA/PA: PAR-06-411
Funding Institute: NIAID
FY Total Cost: $181,125


Project Title: Translational Bioinformatics for Human Developmental Genomics
Principal Investigator: Slonim, Donna
Organization: Tufts University
Project Start Date: Dec. 2, 2008
Project End Date: Nov. 30, 2012
RFA/PA: PAR-07-070
Funding Institute: NICHD
FY Total Cost: $287,197


Project Title: Software Systems for Detecting Rare Mutations
Principal Investigator: Smith, Todd
Organization: Geospiza
Project Start Date: Sept. 30, 2009
Project End Date: Dec. 31, 2012
RFA/PA: PAR-09-220
Funding Institute: NHGRI
FY Total Cost: $582,698


[ pagebreak ]

Project Title: Integration and Visualization of Diverse Biological Data
Principal Investigator: Troyanskaya, Olga
Organization: Princeton University
Project Start Date: July 1, 2004
Project End Date: Dec. 31, 2014
RFA/PA: PAR-09-218
Funding Institute: NIGMS
FY Total Cost: $434,664


Project Title: BioGRID: An Open Integrated Resource for Biological Interaction Data
Principal Investigator: Tyers, Michael David
Organization: Mount Sinai Hospital
Project Start Date: May 15, 2007
Project End Date: Jan. 31, 2016
RFA/PA: PA-10-067
Funding Institute: NCRR
FY Total Cost: $895,794


Project Title: A Multistage Approach to Protein-Protein Docking
Principal Investigator: Vajda, Sandor
Organization: Boston University
Project Start Date: Sept. 1, 2000
Project End Date: Feb. 28, 2013
RFA/PA: PA-07-070
Funding Institute: NIGMS
FY Total Cost: $237,452


Project Title: Integrated Resource for Protein Recognition Studies
Principal Investigator: Vakser, Ilya
Organization: University of Kansa, Lawrence
Project Start Date: March 1, 2005
Project End Date: Feb. 28, 2013
RFA/PA: PAR-07-344
Funding Institute: NIGMS
FY Total Cost: $259,570


Project Title: Statistical Analysis of RNA-Seq Data
Principal Investigator: Wong, Wing H.
Organization: Stanford University
Project Start Date: Jan. 1, 2005
Project End Date: Dec. 31, 2013
RFA/PA: PA-10-067
Funding Institute: NHGRI
FY Total Cost: $377,838


Project Title: Statistical Methods for Finding Missing Heritability
Principal Investigator: Xiong, Momiao
Organization: University of Texas
Project Start Date: Jan. 10, 2011
Project End Date: Dec. 31, 2014
RFA/PA: PA-10-067
Funding Institute: NHLBI
FY Total Cost: $472,153

The Scan

WHO Seeks Booster Pause

According to CNN, the World Health Organization is calling for a moratorium on administering SARS-CoV-2 vaccine boosters until more of the world has received initial doses.

For Those Long Legs

With its genome sequence and subsequent RNAi analyses, researchers have examined the genes that give long legs to daddy longlegs, New Scientist says.

September Plans

The New York Times reports that the US Food and Drug Administration is aiming for early September for full approval of the Pfizer-BioNTech SARS-CoV-2 vaccine.

Nucleic Acids Research Papers on Targeting DNA Damage Response, TSMiner, VarSAn

In Nucleic Acids Research this week: genetic changes affecting DNA damage response inhibitor response, "time-series miner" approach, and more.