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Funding Update: Mar 18, 2011

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NIH bioinformatics grants awarded Nov. 15 — March 4, 2011
(Part two of two)

Project Title: Gene Ontology Consortium
Principal Investigator: Blake, Judith
Organization: Jackson Laboratory
Project Start Date: Jan. 19, 2001
Project End Date: Feb. 28, 2012
Funding Institute: NHGRI
FY Total Cost: $2,923,298


Project Title: Mouse Phenome Project
Principal Investigator: Bogue, Molly
Organization: Jackson Laboratory
Project Start Date: Jul 1, 2004
Project End Date: Feb. 28, 2015
RFA/PA: PA-07-070
Funding Institute: NIDA
FY Total Cost: $363,893


Project Title: Bioinformatic Approaches to Small Molecule Profiling of Cardiometabolic Disease
Principal Investigator: Deo, Rahul Chandrakant
Organization: University of California, San Francisco
Project Start Date: Jul 15, 2010
Project End Date: Feb. 28, 2015
RFA/PA: PA-09-042
Funding Institute: NHLBI
FY Total Cost: $136,958


Project Title: Algorithmic Strategies for Detecting Structural Variation in Genomes
Principal Investigator: Bafna, Vineet
Organization:/strong> University of California, San Diego
Project Start Date: Apr. 1, 2009
Project End Date: Feb. 28, 2013
RFA/PA: PA-07-344
Funding Institute: NHGRI
FY Total Cost: $292,427


Project Title: Flybase: A Drosophila Genomic and Genetic Database
Principal Investigator: Gelbart, William M
Organization: Harvard University
Project Start Date: Aug. 1, 1992
Project End Date: Dec. 31, 2013
Funding Institute: NHGRI
FY Total Cost: $3,764,130


Project Title: Connjur: A Software Integration Platform for Biomolecular NMR Spectroscopy
Principal Investigator: Gryk, Michael R
Organization: University of Connecticut
Project Start Date: Dec. 1, 2008
Project End Date: Nov. 30, 2012
RFA/PA: PA-07-344
Funding Institute: NIGMS
FY Total Cost: $268,487


Project Title: Computer Simulations of Electron Transfer Proteins
Principal Investigator: Ichiye, Toshiko
Organization: Georgetown University
Project Start Date: Feb. 1, 1992
Project End Date: Nov. 30, 2013
RFA/PA: PA-07-070
Funding Institute: NIGMS
FY Total Cost: $271,180


Project Title: Rat Genome Database
Principal Investigator: Jacob, Howard
Organization: Medical College of Wisconsin
Project Start Date: Sept. 30, 1999
Project End Date: Nov. 30, 2014
RFA/PA: PA-07-070
Funding Institute: NHLBI, NIEHS, NIGRI, NIDCD
FY Total Cost: $1,695,538


Project Title: Methods for the Analysis and Integrations of Next-Generation Sequencing with Applications
Principal Investigator: Johnson, William E
Organization: Brigham Young University
Project Start Date: June 1, 2010
Project End Date: Feb. 28, 2015
RFA/PA: PA-07-458 RFA-RR-08-002
Funding Institute: NHGRI
FY Total Cost: $303,480


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Project Title: Computer-Aided Design of Anti-HIV Drugs
Principal Investigator: Jorgensen, William
Organization: Yale University
Project Start Date: Jan. 1, 1999
Project End Date: Dec. 31, 2012
Funding Institute: NIAID
FY Total Cost: $294,921


Project Title: Bioinformatics Research Network Coordinating Center
Principal Investigator: Kesselman, Carl
Organization: University of Southern California
Project Start Date: Dec. 15, 2008
Project End Date: Nov. 30, 2013
RFA/PA: RFA-RR-08-002
Funding Institute: NCRR
FY Total Cost: $3,995,952


Project Title: Web Software for Drug Targeting Signaling Networks in Primary Cell Subsets
Principal Investigator: Kotecha, Nikesh
Organization: Cytobank
Project Start Date: Feb. 9, 2011
Project End Date: Feb. 8, 2012
RFA/PA: PAR-09-220
Funding Institute: NIGMS
FY Total Cost: $150,225


Project Title: Computational Assembly of Beta Barrel Membrane Protein
Principal Investigator: Liang, Jie
Organization: University of Illinois, Chicago
Project Start Date: March 1, 2007
Project End Date: Feb. 29, 2012
Funding Institute: NIGMS
FY Total Cost: $251,293


Project Title: Statistical Methods in Cancer Research
Principal Investigator: Lin, Danyu
Organization: University of North Carolina, Chapel Hill
Project Start Date: April 1, 2000
Project End Date: Jan. 31, 2012
RFA/PA: PA-07-070
Funding Institute: NCI
FY Total Cost: $218,892


Project Title: Flexible Statistical Machine Learning Techniques for Cancer-Related Data
Principal Investigator: Liu, Yufeng
Organization: University of North Carolina, Chapel Hill
Project Start Date: Feb. 1, 2010
Project End Date: Dec. 31, 2014
RFA/PA: PA-07-021
Funding Institute: NCI
FY Total Cost: $271,428


Project Title: National Biomedical NMR Resource at Madison
Principal Investigator: Markley, John
Organization: University of Wisconsin, Madison
Project Start Date: March 1, 1997
Project End Date: Feb. 28, 2015
RFA/PA: PAR-08-259
Funding Institute: NCRR
FY Total Cost: $925,146


Project Title: Supporting Integrative Genomic Analysis Users with GenePattern
Principal Investigator: Mesirov, Jill
Organization: Broad Institute
Project Start Date: June 1, 2005
Project End Date: Dec. 31, 2014
RFA/PA: PAR-08-010
Funding Institute: NIGMS
FY Total Cost: $556,053


Project Title: INIA-Stress: Informatics and Analysis Core
Principal Investigator: Miles, Michael
Organization: Virginia Commonwealth University
Project Start Date: Feb. 20, 2007
Project End Date: Jan. 31, 2012
RFA/PA: RFA-AA-06-101
Funding Institute: NIAAA
FY Total Cost: $355,973


Project Title: An Efficient Lightweight Environment for Biomedical Computation
Principal Investigator: Nekrutenko Anton
Organization: Pennsylvania State University
Project Start Date: May 1, 2009
Project End Date: Feb. 29, 2012
RFA/PA: PAR-07-344
Funding Institute: NHGRI
FY Total Cost: $387,002


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Project Title: Scalable Learning with Ensemble Techniques and Parallel Computing
Principal Investigator: Nilsson, Erik
Organization: Insilicos
Project Start Date: May 1, 2008
Project End Date: Feb. 29, 2012
RFA/PA: PAR-07-160
Funding Institute: NIGMS
FY Total Cost: $374,673


Project Title: Computational Approaches for Structural Variation Studied in Genomes
Principal Investigator: Raphael, Benjamin
Organization: Brown University
Project Start Date: Jan. 1, 2011
Project End Date: Nov. 30, 2015
RFA/PA: PA-10-067
Funding Institute: NHGRI
FY Total Cost: $505,952


Project Title: Gene Expression Database for Mouse Development
Principal Investigator: Ringwald, Martin
Organization: Jackson Laboratory
Project Start Date: Dec. 2, 2010
Project End Date: Nov. 30, 2015
RFA/PA: PA-08-180
Funding Institute: NICHD
FY Total Cost: $2,282,840


Project Title: Computational Discovery and Analysis of Community Structures in Biology Networks
Principal Investigator: Ruan, Jianhua
Organization: University of Texas, San Antonio
Project Start Date: Jan. 1, 2009
Project End Date: Dec. 31, 2012
RFA/PA: PA-08-028
Funding Institute: NIGMS
FY Total Cost: $97,538


Project Title: Bioinformatics Software for Analyzing Microbial Genomes
Principal Investigator: Salzberg, Steven
Organization: University of Maryland
Project Start Date: Mar. 25, 2008
Project End Date: Feb. 29, 2012
RFA/PA: PAR-07-235
Funding Institute: NIGMS
FY Total Cost: $246,585


Project Title: Statistical and Computational Tools for Reconstruction of Gene Regulatory Networks
Principal Investigator: Salzman, Peter
Organization: University of Rochester
Project Start Date: Jan. 1, 2009
Project End Date: Aug. 17, 2011
RFA/PA: PA-06-133
Funding Institute: NLM
FY Total Cost: $86,774


Project Title: Enhancing the Biomedical Computing Platform for Pancreatic Cancer Research
Principal Investigator: Sherman, Simon
Organization: University of Nebraska
Project Start Date: April 1, 2010
Project End Date: Jan. 31, 2015
RFA/PA: PAR-07-344
Funding Institute: NCI
FY Total Cost: $280,092


Project Title: Computational Methods for Uncovering Protein Function in Plasmodium Falciparum
Principal Investigator: Singh, Mona
Organization: Princeton University
Project Start Date: March 1, 2010
Project End Date: Feb. 29, 2012
RFA/PA: PAR-06-411
Funding Institute: NIAID
FY Total Cost: $181,125


Project Title: Translational Bioinformatics for Human Developmental Genomics
Principal Investigator: Slonim, Donna
Organization: Tufts University
Project Start Date: Dec. 2, 2008
Project End Date: Nov. 30, 2012
RFA/PA: PAR-07-070
Funding Institute: NICHD
FY Total Cost: $287,197


Project Title: Software Systems for Detecting Rare Mutations
Principal Investigator: Smith, Todd
Organization: Geospiza
Project Start Date: Sept. 30, 2009
Project End Date: Dec. 31, 2012
RFA/PA: PAR-09-220
Funding Institute: NHGRI
FY Total Cost: $582,698


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Project Title: Integration and Visualization of Diverse Biological Data
Principal Investigator: Troyanskaya, Olga
Organization: Princeton University
Project Start Date: July 1, 2004
Project End Date: Dec. 31, 2014
RFA/PA: PAR-09-218
Funding Institute: NIGMS
FY Total Cost: $434,664


Project Title: BioGRID: An Open Integrated Resource for Biological Interaction Data
Principal Investigator: Tyers, Michael David
Organization: Mount Sinai Hospital
Project Start Date: May 15, 2007
Project End Date: Jan. 31, 2016
RFA/PA: PA-10-067
Funding Institute: NCRR
FY Total Cost: $895,794


Project Title: A Multistage Approach to Protein-Protein Docking
Principal Investigator: Vajda, Sandor
Organization: Boston University
Project Start Date: Sept. 1, 2000
Project End Date: Feb. 28, 2013
RFA/PA: PA-07-070
Funding Institute: NIGMS
FY Total Cost: $237,452


Project Title: Integrated Resource for Protein Recognition Studies
Principal Investigator: Vakser, Ilya
Organization: University of Kansa, Lawrence
Project Start Date: March 1, 2005
Project End Date: Feb. 28, 2013
RFA/PA: PAR-07-344
Funding Institute: NIGMS
FY Total Cost: $259,570


Project Title: Statistical Analysis of RNA-Seq Data
Principal Investigator: Wong, Wing H.
Organization: Stanford University
Project Start Date: Jan. 1, 2005
Project End Date: Dec. 31, 2013
RFA/PA: PA-10-067
Funding Institute: NHGRI
FY Total Cost: $377,838


Project Title: Statistical Methods for Finding Missing Heritability
Principal Investigator: Xiong, Momiao
Organization: University of Texas
Project Start Date: Jan. 10, 2011
Project End Date: Dec. 31, 2014
RFA/PA: PA-10-067
Funding Institute: NHLBI
FY Total Cost: $472,153

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